{"id":"https://openalex.org/W2765426977","doi":"https://doi.org/10.1007/s41019-017-0050-4","title":"Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis","display_name":"Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis","publication_year":2017,"publication_date":"2017-09-01","ids":{"openalex":"https://openalex.org/W2765426977","doi":"https://doi.org/10.1007/s41019-017-0050-4","mag":"2765426977"},"language":"en","primary_location":{"id":"doi:10.1007/s41019-017-0050-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s41019-017-0050-4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs41019-017-0050-4.pdf","source":{"id":"https://openalex.org/S2486411021","display_name":"Data Science and Engineering","issn_l":"2364-1185","issn":["2364-1185","2364-1541"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science and Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://link.springer.com/content/pdf/10.1007%2Fs41019-017-0050-4.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089261582","display_name":"Steffen M\u00f6ller","orcid":"https://orcid.org/0000-0002-7187-4683"},"institutions":[{"id":"https://openalex.org/I1793135","display_name":"Yanbian University","ror":"https://ror.org/039xnh269","country_code":"CN","type":"education","lineage":["https://openalex.org/I1793135"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["CN","DE"],"is_corresponding":true,"raw_author_name":"Steffen M\u00f6ller","raw_affiliation_strings":["Debian Project https://www.debian.org","Rostock University Medical Center, Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Debian Project https://www.debian.org","institution_ids":["https://openalex.org/I1793135"]},{"raw_affiliation_string":"Rostock University Medical Center, Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084579651","display_name":"Stuart W. Prescott","orcid":"https://orcid.org/0000-0001-5639-9688"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I1793135","display_name":"Yanbian University","ror":"https://ror.org/039xnh269","country_code":"CN","type":"education","lineage":["https://openalex.org/I1793135"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Stuart W. Prescott","raw_affiliation_strings":["Debian Project https://www.debian.org","School of Chemical Engineering, UNSW, Sydney, NSW, 2052, Australia"],"affiliations":[{"raw_affiliation_string":"Debian Project https://www.debian.org","institution_ids":["https://openalex.org/I1793135"]},{"raw_affiliation_string":"School of Chemical Engineering, UNSW, Sydney, NSW, 2052, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054358657","display_name":"Lars Wirzenius","orcid":null},"institutions":[{"id":"https://openalex.org/I1793135","display_name":"Yanbian University","ror":"https://ror.org/039xnh269","country_code":"CN","type":"education","lineage":["https://openalex.org/I1793135"]},{"id":"https://openalex.org/I4210109212","display_name":"National Defence University","ror":"https://ror.org/01js4x705","country_code":"FI","type":"education","lineage":["https://openalex.org/I4210109212"]}],"countries":["CN","FI"],"is_corresponding":false,"raw_author_name":"Lars Wirzenius","raw_affiliation_strings":["Debian Project https://www.debian.org","QvarnLabs, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Debian Project https://www.debian.org","institution_ids":["https://openalex.org/I1793135"]},{"raw_affiliation_string":"QvarnLabs, Helsinki, Finland","institution_ids":["https://openalex.org/I4210109212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021398264","display_name":"Petter Reinholdtsen","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I1793135","display_name":"Yanbian University","ror":"https://ror.org/039xnh269","country_code":"CN","type":"education","lineage":["https://openalex.org/I1793135"]}],"countries":["CN","NO"],"is_corresponding":false,"raw_author_name":"Petter Reinholdtsen","raw_affiliation_strings":["Debian Project https://www.debian.org","University Center for Information Technology, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Debian Project https://www.debian.org","institution_ids":["https://openalex.org/I1793135"]},{"raw_affiliation_string":"University Center for Information Technology, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043278195","display_name":"Brad Chapman","orcid":"https://orcid.org/0000-0002-3026-1856"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brad Chapman","raw_affiliation_strings":["Harvard School of Public Health, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Harvard School of Public Health, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028085028","display_name":"Pjotr Prins","orcid":"https://orcid.org/0000-0002-8021-9162"},"institutions":[{"id":"https://openalex.org/I3018483916","display_name":"University Medical Center Utrecht","ror":"https://ror.org/0575yy874","country_code":"NL","type":"funder","lineage":["https://openalex.org/I3018483916"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Pjotr Prins","raw_affiliation_strings":["University Medical Center Utrecht, Utrecht, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University Medical Center Utrecht, Utrecht, The Netherlands","institution_ids":["https://openalex.org/I3018483916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029941394","display_name":"Stian Soiland\u2010Reyes","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126421","display_name":"Forest Products Laboratory","ror":"https://ror.org/031sp1p50","country_code":"US","type":"facility","lineage":["https://openalex.org/I1313416372","https://openalex.org/I1336096307","https://openalex.org/I4210126421"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Stian Soiland-Reyes","raw_affiliation_strings":["Apache Software Foundation, Forest Hill, MD, USA","Common Workflow Language Project http://www.commonwl.org","eScience Lab, School of Computer Science, The University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Apache Software Foundation, Forest Hill, MD, USA","institution_ids":["https://openalex.org/I4210126421"]},{"raw_affiliation_string":"Common Workflow Language Project http://www.commonwl.org","institution_ids":[]},{"raw_affiliation_string":"eScience Lab, School of Computer Science, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066401346","display_name":"Fabian Kl\u00f6tzl","orcid":"https://orcid.org/0000-0002-6930-0592"},"institutions":[{"id":"https://openalex.org/I4210152351","display_name":"Max Planck Institute for Evolutionary Biology","ror":"https://ror.org/0534re684","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210152351"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian Kl\u00f6tzl","raw_affiliation_strings":["Max-Planck-Institute for Evolutionary Biology, Pl\u00f6n, Germany"],"affiliations":[{"raw_affiliation_string":"Max-Planck-Institute for Evolutionary Biology, Pl\u00f6n, Germany","institution_ids":["https://openalex.org/I4210152351"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013660956","display_name":"Andrea Bagnacani","orcid":"https://orcid.org/0000-0002-9675-8056"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andrea Bagnacani","raw_affiliation_strings":["Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007975575","display_name":"Mat\u00fa\u0161 Kala\u0161","orcid":"https://orcid.org/0000-0002-1509-4981"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Mat\u00fa\u0161 Kala\u0161","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081514947","display_name":"Andreas Tille","orcid":null},"institutions":[{"id":"https://openalex.org/I1793135","display_name":"Yanbian University","ror":"https://ror.org/039xnh269","country_code":"CN","type":"education","lineage":["https://openalex.org/I1793135"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Andreas Tille","raw_affiliation_strings":["Debian Project https://www.debian.org"],"affiliations":[{"raw_affiliation_string":"Debian Project https://www.debian.org","institution_ids":["https://openalex.org/I1793135"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020288899","display_name":"Michael R. Crusoe","orcid":"https://orcid.org/0000-0002-2961-9670"},"institutions":[{"id":"https://openalex.org/I1793135","display_name":"Yanbian University","ror":"https://ror.org/039xnh269","country_code":"CN","type":"education","lineage":["https://openalex.org/I1793135"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Michael R. Crusoe","raw_affiliation_strings":["Common Workflow Language Project http://www.commonwl.org","Debian Project https://www.debian.org"],"affiliations":[{"raw_affiliation_string":"Common Workflow Language Project http://www.commonwl.org","institution_ids":[]},{"raw_affiliation_string":"Debian Project https://www.debian.org","institution_ids":["https://openalex.org/I1793135"]}]}],"institutions":[],"countries_distinct_count":8,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5089261582"],"corresponding_institution_ids":["https://openalex.org/I1793135","https://openalex.org/I4665924"],"apc_list":null,"apc_paid":null,"fwci":8.2537,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.97348599,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2","issue":"3","first_page":"232","last_page":"244"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8852226734161377},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7489052414894104},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.5714200139045715},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5690861940383911},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5680608749389648},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.5329246520996094},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.5133787393569946},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5117497444152832},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4322595000267029},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41118985414505005},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25241267681121826}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8852226734161377},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7489052414894104},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.5714200139045715},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5690861940383911},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5680608749389648},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.5329246520996094},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.5133787393569946},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5117497444152832},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4322595000267029},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41118985414505005},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25241267681121826},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1007/s41019-017-0050-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s41019-017-0050-4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs41019-017-0050-4.pdf","source":{"id":"https://openalex.org/S2486411021","display_name":"Data Science and Engineering","issn_l":"2364-1185","issn":["2364-1185","2364-1541"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science and Engineering","raw_type":"journal-article"},{"id":"pmh:oai:unsworks.unsw.edu.au:1959.4/unsworks_48073","is_oa":true,"landing_page_url":"http://handle.unsw.edu.au/1959.4/unsworks_48073","pdf_url":null,"source":{"id":"https://openalex.org/S4377196481","display_name":"UNSWorks (UNSW Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I31746571","host_organization_name":"UNSW Sydney","host_organization_lineage":["https://openalex.org/I31746571"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:bora.uib.no:1956/18196","is_oa":true,"landing_page_url":"https://hdl.handle.net/1956/18196","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science and Engineering","raw_type":null},{"id":"pmh:oai:doaj.org/article:dc6f615420f949e497aea96eb2551a47","is_oa":true,"landing_page_url":"https://doaj.org/article/dc6f615420f949e497aea96eb2551a47","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science and Engineering, Vol 2, Iss 3, Pp 232-244 (2017)","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/054caf9b-cab0-4e01-b2fa-b63fed8b45f9","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/054caf9b-cab0-4e01-b2fa-b63fed8b45f9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"M\u00f6ller, S, Prescott, S W, Wirzenius, L, Reinholdtsen, P, Chapman, B, Prins, P, Soiland-Reyes, S, Kl\u00f6tzl, F, Bagnacani, A, Kala\u0161, M, Tille, A & Crusoe, M R 2017, 'Robust cross-platform workflows : How technical and scientific communities collaborate to develop, test and share best practices for data analysis', Data Science and Engineering. https://doi.org/10.1007/s41019-017-0050-4","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/054caf9b-cab0-4e01-b2fa-b63fed8b45f9","is_oa":true,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/robust-crossplatform-workflows(054caf9b-cab0-4e01-b2fa-b63fed8b45f9).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:unsworks.library.unsw.edu.au:1959.4/unsworks_48073","is_oa":true,"landing_page_url":"http://hdl.handle.net/1959.4/unsworks_48073","pdf_url":null,"source":{"id":"https://openalex.org/S4306401737","display_name":"UNSWorks (University of New South Wales, Sydney, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40053085","host_organization_name":"Australian Defence Force Academy","host_organization_lineage":["https://openalex.org/I40053085"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science and Engineering, 2, 3, 232-244","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:www.duo.uio.no:10852/64669","is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/64669","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2364-1185","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:1039191","is_oa":true,"landing_page_url":"https://zenodo.org/communities/bioexcel","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science and Engineering, (2017-11-16)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1007/s41019-017-0050-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s41019-017-0050-4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs41019-017-0050-4.pdf","source":{"id":"https://openalex.org/S2486411021","display_name":"Data Science and Engineering","issn_l":"2364-1185","issn":["2364-1185","2364-1541"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science and Engineering","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G140804232","display_name":"Centre of Excellence for Biomolecular Research","funder_award_id":"675728","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2005278011","display_name":null,"funder_award_id":"H2020-EINFRA-2015-1","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3159704455","display_name":null,"funder_award_id":"H2020-EINFRA-2015-1","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G522893879","display_name":null,"funder_award_id":"H2020-PHC-2014","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5911840264","display_name":null,"funder_award_id":"H2020-PHC-2014","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6736258786","display_name":null,"funder_award_id":"H2020-PHC","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7621194933","display_name":null,"funder_award_id":"633589","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7714569025","display_name":null,"funder_award_id":"633589","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8875621885","display_name":null,"funder_award_id":"675728","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2765426977.pdf","grobid_xml":"https://content.openalex.org/works/W2765426977.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1581427033","https://openalex.org/W1831130656","https://openalex.org/W1835740130","https://openalex.org/W1893743545","https://openalex.org/W1985468994","https://openalex.org/W2011064108","https://openalex.org/W2013434113","https://openalex.org/W2038777423","https://openalex.org/W2045342588","https://openalex.org/W2049185824","https://openalex.org/W2081266727","https://openalex.org/W2134386780","https://openalex.org/W2135253885","https://openalex.org/W2136482257","https://openalex.org/W2140157849","https://openalex.org/W2141541659","https://openalex.org/W2145186656","https://openalex.org/W2145374174","https://openalex.org/W2147733682","https://openalex.org/W2160697532","https://openalex.org/W2169594074","https://openalex.org/W2170654685","https://openalex.org/W2178468995","https://openalex.org/W2214694321","https://openalex.org/W2230655163","https://openalex.org/W2310259903","https://openalex.org/W2346143774","https://openalex.org/W2507776852","https://openalex.org/W2529938006","https://openalex.org/W2534699084","https://openalex.org/W2539403003","https://openalex.org/W2565191020","https://openalex.org/W2569999104","https://openalex.org/W2576576365","https://openalex.org/W2588919328","https://openalex.org/W2605897695","https://openalex.org/W2613409207","https://openalex.org/W2734346812","https://openalex.org/W2949155616","https://openalex.org/W3098304617"],"related_works":["https://openalex.org/W2049143847","https://openalex.org/W2352774566","https://openalex.org/W2356466503","https://openalex.org/W2376671203","https://openalex.org/W2391168633","https://openalex.org/W2385499106","https://openalex.org/W1574425962","https://openalex.org/W2354357087","https://openalex.org/W2387628393","https://openalex.org/W2370201914"],"abstract_inverted_index":{"Information":[0],"integration":[1,184],"and":[2,69,99,113,131,163,174,186,202],"workflow":[3,21,71,112,192],"technologies":[4],"for":[5,43,105,208,224],"data":[6,51,56,102,145],"analysis":[7],"have":[8,62,81,122],"always":[9],"been":[10],"major":[11],"fields":[12],"of":[13,19,66,116,129,135,144,183,190,196,211],"investigation":[14],"in":[15,28,74,84,147,153],"bioinformatics.":[16],"A":[17,110],"range":[18],"popular":[20],"suites":[22],"are":[23,108],"available":[24,146],"to":[25,34,39,61,141,165,200,240],"support":[26],"analyses":[27],"computational":[29,79],"biology.":[30],"Commercial":[31],"providers":[32],"tend":[33],"offer":[35],"prepared":[36],"applications":[37],"remote":[38],"their":[40],"clients.":[41],"However,":[42],"most":[44],"academic":[45],"environments":[46],"with":[47,91,177],"local":[48,228],"expertise,":[49],"novel":[50,55],"collection":[52],"techniques":[53],"or":[54,88,103,231],"analysis,":[57],"it":[58],"is":[59,217],"essential":[60],"all":[63],"the":[64,114,117,127,132,136,142,148,158,170,181,188,205,209,225,232,237],"flexibility":[65],"open-source":[67,70,197],"tools":[68,87,206],"descriptions.":[72],"Workflows":[73],"data-driven":[75],"science":[76],"such":[77,212],"as":[78],"biology":[80],"considerably":[82],"gained":[83],"complexity.":[85],"New":[86],"new":[89,100],"releases":[90],"additional":[92],"features":[93],"arrive":[94],"at":[95],"an":[96,123],"enormous":[97,124],"pace,":[98],"reference":[101],"concepts":[104],"quality":[106],"control":[107],"emerging.":[109],"well-abstracted":[111],"exchange":[115],"same":[118],"across":[119,244],"work":[120],"groups":[121],"impact":[125],"on":[126,180,194,227],"efficiency":[128],"research":[130],"further":[133],"development":[134,173],"field.":[137],"High-throughput":[138],"sequencing":[139],"adds":[140],"avalanche":[143],"field;":[149],"efficient":[150],"computation":[151],"and,":[152],"particular,":[154],"parallel":[155],"execution":[156,210,226],"motivate":[157],"transition":[159],"from":[160,221],"traditional":[161],"scripts":[162],"Makefiles":[164],"workflows.":[166,215],"We":[167],"here":[168],"review":[169],"extant":[171],"software":[172,199,246],"distribution":[175],"model":[176],"a":[178],"focus":[179],"role":[182],"testing":[185],"discuss":[187],"effect":[189],"common":[191],"language":[193],"distributions":[195],"scientific":[198],"swiftly":[201],"reliably":[203],"provide":[204],"demanded":[207],"formally":[213],"described":[214],"It":[216],"contended":[218],"that,":[219],"alleviated":[220],"technical":[222,238],"differences":[223],"machines,":[229],"clusters":[230],"cloud,":[233],"communities":[234],"also":[235],"gain":[236],"means":[239],"test":[241],"workflow-driven":[242],"interaction":[243],"several":[245],"packages.":[247]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
