{"id":"https://openalex.org/W2600315427","doi":"https://doi.org/10.1007/s40708-017-0062-x","title":"An ontology-based search engine for digital reconstructions of neuronal morphology","display_name":"An ontology-based search engine for digital reconstructions of neuronal morphology","publication_year":2017,"publication_date":"2017-03-23","ids":{"openalex":"https://openalex.org/W2600315427","doi":"https://doi.org/10.1007/s40708-017-0062-x","mag":"2600315427","pmid":"https://pubmed.ncbi.nlm.nih.gov/28337675"},"language":"en","primary_location":{"id":"doi:10.1007/s40708-017-0062-x","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40708-017-0062-x","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-017-0062-x.pdf","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-017-0062-x.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086539272","display_name":"Sridevi Polavaram","orcid":null},"institutions":[{"id":"https://openalex.org/I40036882","display_name":"Institute for Advanced Study","ror":"https://ror.org/00f809463","country_code":"US","type":"facility","lineage":["https://openalex.org/I40036882"]},{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sridevi Polavaram","raw_affiliation_strings":["Center for Neural Informatics, Structures and Plasticity, Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Neural Informatics, Structures and Plasticity, Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631","https://openalex.org/I40036882"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087672831","display_name":"Giorgio A. Ascoli","orcid":"https://orcid.org/0000-0002-0964-676X"},"institutions":[{"id":"https://openalex.org/I40036882","display_name":"Institute for Advanced Study","ror":"https://ror.org/00f809463","country_code":"US","type":"facility","lineage":["https://openalex.org/I40036882"]},{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giorgio A. Ascoli","raw_affiliation_strings":["Center for Neural Informatics, Structures and Plasticity, Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA. ascoli@gmu.edu","Center for Neural Informatics, Structures and Plasticity, Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Neural Informatics, Structures and Plasticity, Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA. ascoli@gmu.edu","institution_ids":[]},{"raw_affiliation_string":"Center for Neural Informatics, Structures and Plasticity, Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631","https://openalex.org/I40036882"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5086539272"],"corresponding_institution_ids":["https://openalex.org/I162714631","https://openalex.org/I40036882"],"apc_list":{"value":790,"currency":"GBP","value_usd":969},"apc_paid":{"value":790,"currency":"GBP","value_usd":969},"fwci":0.5614,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.65635709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"4","issue":"2","first_page":"123","last_page":"134"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9700999855995178,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.9053282737731934},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7981637716293335},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6059898734092712},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5732179284095764},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5641298890113831},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.431846022605896},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.4301665425300598},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4300585389137268},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.42094430327415466},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23981010913848877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22524583339691162},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.19517159461975098}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.9053282737731934},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7981637716293335},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6059898734092712},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5732179284095764},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5641298890113831},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.431846022605896},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.4301665425300598},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4300585389137268},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.42094430327415466},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23981010913848877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22524583339691162},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.19517159461975098},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s40708-017-0062-x","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40708-017-0062-x","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-017-0062-x.pdf","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},{"id":"pmid:28337675","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28337675","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain informatics","raw_type":null},{"id":"pmh:oai:europepmc.org:4286449","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5413594","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s40708-017-0062-x","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40708-017-0062-x","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-017-0062-x.pdf","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.44999998807907104,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G3359890016","display_name":null,"funder_award_id":"NS39600","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3708318561","display_name":null,"funder_award_id":"NS39600","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G4577985539","display_name":null,"funder_award_id":"MURI 14101-0198","funder_id":"https://openalex.org/F4320337345","funder_display_name":"Office of Naval Research"},{"id":"https://openalex.org/G4700852728","display_name":null,"funder_award_id":"R01 NS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5503532716","display_name":null,"funder_award_id":"R01 NS39600","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G8891450097","display_name":null,"funder_award_id":"R01 NS39600","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309029","display_name":"George Mason University","ror":"https://ror.org/02jqj7156"},{"id":"https://openalex.org/F4320311012","display_name":"Scuola Normale Superiore","ror":"https://ror.org/03aydme10"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333591","display_name":"Multidisciplinary University Research Initiative","ror":null},{"id":"https://openalex.org/F4320337345","display_name":"Office of Naval Research","ror":"https://ror.org/00rk2pe57"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2600315427.pdf","grobid_xml":"https://content.openalex.org/works/W2600315427.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W282310047","https://openalex.org/W1516892340","https://openalex.org/W1555644687","https://openalex.org/W1572535120","https://openalex.org/W1601038846","https://openalex.org/W1726261545","https://openalex.org/W1971175217","https://openalex.org/W1986017913","https://openalex.org/W1993379522","https://openalex.org/W2004884668","https://openalex.org/W2006353394","https://openalex.org/W2023049070","https://openalex.org/W2042967751","https://openalex.org/W2043494033","https://openalex.org/W2043935419","https://openalex.org/W2050259398","https://openalex.org/W2061186544","https://openalex.org/W2061996369","https://openalex.org/W2062450961","https://openalex.org/W2064025050","https://openalex.org/W2070468940","https://openalex.org/W2084397284","https://openalex.org/W2085989895","https://openalex.org/W2086550814","https://openalex.org/W2096525273","https://openalex.org/W2096704019","https://openalex.org/W2098580305","https://openalex.org/W2098906161","https://openalex.org/W2112466127","https://openalex.org/W2113142309","https://openalex.org/W2133109597","https://openalex.org/W2137600012","https://openalex.org/W2138598227","https://openalex.org/W2192374892","https://openalex.org/W2252925835","https://openalex.org/W2418962583","https://openalex.org/W2467331991","https://openalex.org/W2951002538","https://openalex.org/W3102771275","https://openalex.org/W4230327376","https://openalex.org/W4240231372","https://openalex.org/W4240572877","https://openalex.org/W4245543257"],"related_works":["https://openalex.org/W1552553528","https://openalex.org/W2183628870","https://openalex.org/W3023161639","https://openalex.org/W2008531296","https://openalex.org/W2782431616","https://openalex.org/W2394393789","https://openalex.org/W2374379029","https://openalex.org/W1503116306","https://openalex.org/W4299935056","https://openalex.org/W4385414095"],"abstract_inverted_index":{"Neuronal":[0],"morphology":[1],"is":[2,19,55,75],"extremely":[3],"diverse":[4],"across":[5],"and":[6,14,31,38,46,85,119,158,181,204],"within":[7],"animal":[8,154],"species,":[9,155],"developmental":[10],"stages,":[11],"brain":[12],"regions,":[13,157],"cell":[15,159],"types.":[16,160],"This":[17],"diversity":[18],"functionally":[20],"important":[21],"because":[22],"neuronal":[23],"structure":[24],"strongly":[25],"affects":[26],"synaptic":[27],"integration,":[28],"spiking":[29],"dynamics,":[30],"network":[32],"connectivity.":[33],"Digital":[34],"reconstructions":[35],"of":[36,61,63,94,108,116,120,129,138,145,153,197,232],"axonal":[37],"dendritic":[39],"arbors":[40],"are":[41],"thus":[42],"essential":[43],"to":[44,170,218],"quantify":[45],"model":[47],"information":[48],"processing":[49],"in":[50,103,168],"the":[51,82,101,106,114,127,150,220,224],"nervous":[52],"system.":[53],"NeuroMorpho.Org":[54,139,169],"an":[56,121,208],"established":[57],"repository":[58],"containing":[59],"tens":[60],"thousands":[62],"digitally":[64],"reconstructed":[65],"neurons":[66],"shared":[67],"by":[68,89,179,235],"several":[69],"hundred":[70],"laboratories":[71],"worldwide.":[72],"Each":[73],"neuron":[74],"annotated":[76],"with":[77,105,213],"specific":[78],"metadata":[79,96,124,140,166,240],"based":[80,200],"on":[81,142,149,201],"published":[83],"references":[84],"additional":[86],"details":[87],"provided":[88],"data":[90,199,221],"owners.":[91],"The":[92],"number":[93],"represented":[95],"concepts":[97],"has":[98],"grown":[99],"over":[100],"years":[102],"parallel":[104],"increase":[107],"available":[109],"data.":[110],"Until":[111],"now,":[112],"however,":[113],"lack":[115],"standardized":[117],"terminologies":[118],"adequately":[122],"structured":[123],"schema":[125],"limited":[126],"effectiveness":[128],"user":[130,211],"searches.":[131],"Here":[132],"we":[133,187],"present":[134],"a":[135,143,190,230],"new":[136],"organization":[137],"grounded":[141],"set":[144],"interconnected":[146],"hierarchies":[147],"focusing":[148],"main":[151],"dimensions":[152],"anatomical":[156],"We":[161],"have":[162],"comprehensively":[163],"mapped":[164],"each":[165],"term":[167],"this":[171,184],"formal":[172],"ontology,":[173],"explicitly":[174],"resolving":[175],"all":[176],"ambiguities":[177],"caused":[178],"synonymy":[180],"homonymy.":[182],"Leveraging":[183],"consistent":[185],"framework,":[186],"introduce":[188],"OntoSearch,":[189],"powerful":[191],"functionality":[192],"that":[193],"seamlessly":[194],"enables":[195],"retrieval":[196],"morphological":[198],"expert":[202],"knowledge":[203],"logical":[205],"inferences":[206],"through":[207],"intuitive":[209],"string-based":[210],"interface":[212],"auto-complete":[214],"capability.":[215],"In":[216],"addition":[217],"returning":[219],"directly":[222],"matching":[223],"search":[225],"criteria,":[226],"OntoSearch":[227],"also":[228],"identifies":[229],"pool":[231],"possible":[233],"hits":[234],"taking":[236],"into":[237],"consideration":[238],"incomplete":[239],"annotation.":[241]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
