{"id":"https://openalex.org/W2338784100","doi":"https://doi.org/10.1007/s40708-016-0036-4","title":"An adaptive annotation approach for biomedical entity and relation recognition","display_name":"An adaptive annotation approach for biomedical entity and relation recognition","publication_year":2016,"publication_date":"2016-02-26","ids":{"openalex":"https://openalex.org/W2338784100","doi":"https://doi.org/10.1007/s40708-016-0036-4","mag":"2338784100","pmid":"https://pubmed.ncbi.nlm.nih.gov/27747591"},"language":"en","primary_location":{"id":"doi:10.1007/s40708-016-0036-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40708-016-0036-4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-016-0036-4.pdf","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-016-0036-4.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039544387","display_name":"Seid Muhie Yimam","orcid":"https://orcid.org/0000-0002-8289-388X"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Seid Muhie Yimam","raw_affiliation_strings":["TU Darmstadt CS Department, FG Language Technology, 64289, Darmstadt, Germany. seidymam@gmail.com","TU Darmstadt CS Department, FG Language Technology, 64289, Darmstadt, Germany"],"affiliations":[{"raw_affiliation_string":"TU Darmstadt CS Department, FG Language Technology, 64289, Darmstadt, Germany. seidymam@gmail.com","institution_ids":[]},{"raw_affiliation_string":"TU Darmstadt CS Department, FG Language Technology, 64289, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021287757","display_name":"Chris Biemann","orcid":"https://orcid.org/0000-0002-8449-9624"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Chris Biemann","raw_affiliation_strings":["TU Darmstadt CS Department, FG Language Technology, 64289, Darmstadt, Germany"],"affiliations":[{"raw_affiliation_string":"TU Darmstadt CS Department, FG Language Technology, 64289, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045132220","display_name":"Ljiljana Trtica Majnari\u0107","orcid":"https://orcid.org/0000-0003-1330-2254"},"institutions":[{"id":"https://openalex.org/I51314090","display_name":"University of Osijek","ror":"https://ror.org/05sw4wc49","country_code":"HR","type":"education","lineage":["https://openalex.org/I51314090"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Ljiljana Majnaric","raw_affiliation_strings":["Josip Juraj Strossmayer University of Osijek Faculty of Medicine Osijek, Osijek, Croatia"],"affiliations":[{"raw_affiliation_string":"Josip Juraj Strossmayer University of Osijek Faculty of Medicine Osijek, Osijek, Croatia","institution_ids":["https://openalex.org/I51314090"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050618723","display_name":"\u0160efket \u0160abanovi\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I51314090","display_name":"University of Osijek","ror":"https://ror.org/05sw4wc49","country_code":"HR","type":"education","lineage":["https://openalex.org/I51314090"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"\u0160efket \u0160abanovi\u0107","raw_affiliation_strings":["Josip Juraj Strossmayer University of Osijek Faculty of Medicine Osijek, Osijek, Croatia"],"affiliations":[{"raw_affiliation_string":"Josip Juraj Strossmayer University of Osijek Faculty of Medicine Osijek, Osijek, Croatia","institution_ids":["https://openalex.org/I51314090"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034657358","display_name":"Andreas Holzinger","orcid":"https://orcid.org/0000-0002-6786-5194"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andreas Holzinger","raw_affiliation_strings":["Research Unit HCI-KDD Institute for Medical Informatics, Statistics and Documentation Medical University Graz, Auenbruggerplatz 2, 8036, Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Research Unit HCI-KDD Institute for Medical Informatics, Statistics and Documentation Medical University Graz, Auenbruggerplatz 2, 8036, Graz, Austria","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039544387"],"corresponding_institution_ids":["https://openalex.org/I31512782"],"apc_list":{"value":790,"currency":"GBP","value_usd":969},"apc_paid":{"value":790,"currency":"GBP","value_usd":969},"fwci":2.2662,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.87920121,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"3","first_page":"157","last_page":"168"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9341474771499634},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8076460957527161},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6035453081130981},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5250884294509888},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5241185426712036},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5205008387565613},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4916737675666809},{"id":"https://openalex.org/keywords/iterative-learning-control","display_name":"Iterative learning control","score":0.4481828510761261},{"id":"https://openalex.org/keywords/human-in-the-loop","display_name":"Human-in-the-loop","score":0.4479319155216217},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4198117256164551},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.32709017395973206},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23248863220214844},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.08859941363334656}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9341474771499634},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8076460957527161},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6035453081130981},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5250884294509888},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5241185426712036},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5205008387565613},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4916737675666809},{"id":"https://openalex.org/C117619785","wikidata":"https://www.wikidata.org/wiki/Q6094414","display_name":"Iterative learning control","level":3,"score":0.4481828510761261},{"id":"https://openalex.org/C2780626000","wikidata":"https://www.wikidata.org/wiki/Q5936775","display_name":"Human-in-the-loop","level":2,"score":0.4479319155216217},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4198117256164551},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.32709017395973206},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23248863220214844},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.08859941363334656}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s40708-016-0036-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40708-016-0036-4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-016-0036-4.pdf","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},{"id":"pmid:27747591","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27747591","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain informatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4999566","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4999566","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Inform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s40708-016-0036-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40708-016-0036-4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2Fs40708-016-0036-4.pdf","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6000000238418579,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2338784100.pdf","grobid_xml":"https://content.openalex.org/works/W2338784100.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W15148259","https://openalex.org/W21497345","https://openalex.org/W76749362","https://openalex.org/W93452043","https://openalex.org/W94547874","https://openalex.org/W102233799","https://openalex.org/W159358204","https://openalex.org/W174126432","https://openalex.org/W1255693054","https://openalex.org/W1482328859","https://openalex.org/W1499516075","https://openalex.org/W1566432371","https://openalex.org/W1757434866","https://openalex.org/W1983541059","https://openalex.org/W1987391560","https://openalex.org/W1990343723","https://openalex.org/W2001357674","https://openalex.org/W2003238113","https://openalex.org/W2017010150","https://openalex.org/W2021331223","https://openalex.org/W2022166150","https://openalex.org/W2023736097","https://openalex.org/W2032566933","https://openalex.org/W2044633729","https://openalex.org/W2048817820","https://openalex.org/W2061948523","https://openalex.org/W2072167633","https://openalex.org/W2094591616","https://openalex.org/W2095766518","https://openalex.org/W2096529583","https://openalex.org/W2096876054","https://openalex.org/W2115639274","https://openalex.org/W2117733879","https://openalex.org/W2125577751","https://openalex.org/W2145270227","https://openalex.org/W2150542838","https://openalex.org/W2150827725","https://openalex.org/W2153225416","https://openalex.org/W2159709123","https://openalex.org/W2160987310","https://openalex.org/W2168842392","https://openalex.org/W2168905447","https://openalex.org/W2250857132","https://openalex.org/W2251026067","https://openalex.org/W2251104783","https://openalex.org/W2251403365","https://openalex.org/W2273337586","https://openalex.org/W2300445845","https://openalex.org/W2338784100","https://openalex.org/W2394935510","https://openalex.org/W2498157657","https://openalex.org/W2557283755","https://openalex.org/W2578406773","https://openalex.org/W2793828080","https://openalex.org/W2902141984","https://openalex.org/W2914431807","https://openalex.org/W2916211284","https://openalex.org/W4210683789","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2169232658","https://openalex.org/W2444550338"],"abstract_inverted_index":{"In":[0,21,89,121],"this":[1],"article,":[2],"we":[3,11,85,93],"demonstrate":[4,70],"the":[5,79,90,122,145],"impact":[6],"of":[7,81,107,147],"interactive":[8,73],"machine":[9,25,53],"learning:":[10],"develop":[12],"biomedical":[13],"entity":[14],"recognition":[15],"dataset":[16,83],"using":[17],"a":[18,52,105,129,168],"human-into-the-loop":[19],"approach.":[20],"contrary":[22],"to":[23,63,111,114,167],"classical":[24],"learning,":[26],"human-in-the-loop":[27],"approaches":[28],"do":[29],"not":[30],"operate":[31],"on":[32,58],"predefined":[33],"training":[34],"or":[35],"test":[36],"sets,":[37],"but":[38],"assume":[39],"that":[40,71,103,117],"human":[41],"input":[42],"regarding":[43],"system":[44],"improvement":[45],"is":[46,56],"supplied":[47],"iteratively.":[48],"Here,":[49],"during":[50],"annotation,":[51,84],"learning":[54,153],"model":[55],"built":[57],"previous":[59],"annotations":[60],"and":[61,74,101,162,164],"used":[62],"propose":[64],"labels":[65],"for":[66,138],"subsequent":[67],"annotation.":[68],"To":[69],"such":[72],"iterative":[75,97],"annotation":[76,98,119,146],"speeds":[77],"up":[78],"development":[80],"quality":[82],"conduct":[86],"three":[87],"experiments.":[88],"first":[91],"experiment,":[92,124],"carry":[94],"out":[95],"an":[96],"experimental":[99],"simulation":[100],"show":[102],"only":[104],"handful":[106],"medical":[108,134],"abstracts":[109],"need":[110],"be":[112],"annotated":[113],"produce":[115],"suggestions":[116],"increase":[118],"speed.":[120],"second":[123],"clinical":[125],"doctors":[126],"have":[127],"conducted":[128],"case":[130],"study":[131],"in":[132],"annotating":[133],"terms":[135],"documents":[136],"relevant":[137],"their":[139],"research.":[140],"The":[141,156],"third":[142],"experiment":[143],"explores":[144],"semantic":[148],"relations":[149],"with":[150],"relation":[151],"instance":[152],"across":[154],"documents.":[155],"experiments":[157],"validate":[158],"our":[159],"method":[160],"qualitatively":[161],"quantitatively,":[163],"give":[165],"rise":[166],"more":[169],"personalized,":[170],"responsive":[171],"information":[172],"extraction":[173],"technology.":[174]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
