{"id":"https://openalex.org/W2984012407","doi":"https://doi.org/10.1007/s40484-019-0180-y","title":"WIPER: Weighted in\u2010Path Edge Ranking for biomolecular association networks","display_name":"WIPER: Weighted in\u2010Path Edge Ranking for biomolecular association networks","publication_year":2019,"publication_date":"2019-11-12","ids":{"openalex":"https://openalex.org/W2984012407","doi":"https://doi.org/10.1007/s40484-019-0180-y","mag":"2984012407","pmid":"https://pubmed.ncbi.nlm.nih.gov/38525413"},"language":"en","primary_location":{"id":"doi:10.1007/s40484-019-0180-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40484-019-0180-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s40484-019-0180-y.pdf","source":{"id":"https://openalex.org/S4210172333","display_name":"Quantitative Biology","issn_l":"2095-4689","issn":["2095-4689","2095-4697"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Quantitative Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://link.springer.com/content/pdf/10.1007/s40484-019-0180-y.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041167576","display_name":"Zongliang Yue","orcid":"https://orcid.org/0000-0001-8290-123X"},"institutions":[{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zongliang Yue","raw_affiliation_strings":["<!--1--> Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA"],"affiliations":[{"raw_affiliation_string":"<!--1--> Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","institution_ids":["https://openalex.org/I17301866"]},{"raw_affiliation_string":"Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086559814","display_name":"Thanh Nguyen","orcid":"https://orcid.org/0000-0002-8440-1594"},"institutions":[{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thanh Nguyen","raw_affiliation_strings":["<!--1--> Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA"],"affiliations":[{"raw_affiliation_string":"<!--1--> Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","institution_ids":["https://openalex.org/I17301866"]},{"raw_affiliation_string":"Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104111156","display_name":"Eric Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Zhang","raw_affiliation_strings":["<!--2--> Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA"],"affiliations":[{"raw_affiliation_string":"<!--2--> Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030985040","display_name":"Jianyi Zhang","orcid":"https://orcid.org/0000-0002-3955-6554"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianyi Zhang","raw_affiliation_strings":["<!--2--> Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA"],"affiliations":[{"raw_affiliation_string":"<!--2--> Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058469124","display_name":"Jake Y. Chen","orcid":"https://orcid.org/0000-0001-8829-7504"},"institutions":[{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jake Y. Chen","raw_affiliation_strings":["<!--1--> Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","<!--2--> Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","<!--3--> Department of Computer Science University of Alabama Birmingham AL 35233 USA","Department of Computer Science University of Alabama Birmingham AL 35233 USA","Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA"],"affiliations":[{"raw_affiliation_string":"<!--1--> Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","institution_ids":["https://openalex.org/I17301866"]},{"raw_affiliation_string":"<!--2--> Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"<!--3--> Department of Computer Science University of Alabama Birmingham AL 35233 USA","institution_ids":["https://openalex.org/I17301866"]},{"raw_affiliation_string":"Department of Computer Science University of Alabama Birmingham AL 35233 USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Engineering University of Alabama Birmingham AL 35233 USA","institution_ids":[]},{"raw_affiliation_string":"Informatics Institute School of Medicine University of Alabama Birmingham AL 35233 USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5058469124"],"corresponding_institution_ids":["https://openalex.org/I17301866","https://openalex.org/I32389192"],"apc_list":null,"apc_paid":null,"fwci":0.3435,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60312062,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"7","issue":"4","first_page":"313","last_page":"326"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/betweenness-centrality","display_name":"Betweenness centrality","score":0.9036489725112915},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6504748463630676},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5874971151351929},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.5604481101036072},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5580499172210693},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.5385618805885315},{"id":"https://openalex.org/keywords/tree-traversal","display_name":"Tree traversal","score":0.5066388249397278},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.45423147082328796},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43409860134124756},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42632395029067993},{"id":"https://openalex.org/keywords/fyn","display_name":"FYN","score":0.41766366362571716},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3437359631061554},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3172481656074524},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2557055950164795},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.19339793920516968},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18730640411376953},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.14733615517616272},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11101588606834412},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.08337205648422241}],"concepts":[{"id":"https://openalex.org/C117045392","wikidata":"https://www.wikidata.org/wiki/Q4899215","display_name":"Betweenness centrality","level":3,"score":0.9036489725112915},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6504748463630676},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5874971151351929},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.5604481101036072},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5580499172210693},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.5385618805885315},{"id":"https://openalex.org/C140745168","wikidata":"https://www.wikidata.org/wiki/Q1210082","display_name":"Tree traversal","level":2,"score":0.5066388249397278},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.45423147082328796},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43409860134124756},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42632395029067993},{"id":"https://openalex.org/C37686147","wikidata":"https://www.wikidata.org/wiki/Q423628","display_name":"FYN","level":4,"score":0.41766366362571716},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3437359631061554},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3172481656074524},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2557055950164795},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.19339793920516968},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18730640411376953},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.14733615517616272},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11101588606834412},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.08337205648422241},{"id":"https://openalex.org/C108636557","wikidata":"https://www.wikidata.org/wiki/Q21109354","display_name":"Proto-oncogene tyrosine-protein kinase Src","level":3,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s40484-019-0180-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40484-019-0180-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s40484-019-0180-y.pdf","source":{"id":"https://openalex.org/S4210172333","display_name":"Quantitative Biology","issn_l":"2095-4689","issn":["2095-4689","2095-4697"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Quantitative Biology","raw_type":"journal-article"},{"id":"pmid:38525413","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38525413","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Quantitative biology (Beijing, China)","raw_type":null}],"best_oa_location":{"id":"doi:10.1007/s40484-019-0180-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s40484-019-0180-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s40484-019-0180-y.pdf","source":{"id":"https://openalex.org/S4210172333","display_name":"Quantitative Biology","issn_l":"2095-4689","issn":["2095-4689","2095-4697"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Quantitative Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G499346657","display_name":null,"funder_award_id":"start-up","funder_id":"https://openalex.org/F4320310431","funder_display_name":"University of Alabama at Birmingham"},{"id":"https://openalex.org/G6063100290","display_name":null,"funder_award_id":"U01CA223976","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306230","display_name":"American Heart Association","ror":"https://ror.org/013kjyp64"},{"id":"https://openalex.org/F4320310431","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205"},{"id":"https://openalex.org/F4320312852","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2984012407.pdf","grobid_xml":"https://content.openalex.org/works/W2984012407.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1552045589","https://openalex.org/W1575736368","https://openalex.org/W1699757347","https://openalex.org/W1944525636","https://openalex.org/W1976937534","https://openalex.org/W1991907198","https://openalex.org/W2007245700","https://openalex.org/W2017079501","https://openalex.org/W2028145367","https://openalex.org/W2029848348","https://openalex.org/W2040975602","https://openalex.org/W2050583899","https://openalex.org/W2067579749","https://openalex.org/W2083048924","https://openalex.org/W2087861588","https://openalex.org/W2089467986","https://openalex.org/W2097789418","https://openalex.org/W2101349818","https://openalex.org/W2110160785","https://openalex.org/W2116747022","https://openalex.org/W2117179247","https://openalex.org/W2117692326","https://openalex.org/W2118169662","https://openalex.org/W2119482228","https://openalex.org/W2137969630","https://openalex.org/W2144738674","https://openalex.org/W2155589321","https://openalex.org/W2166267715","https://openalex.org/W2167669151","https://openalex.org/W2169528473","https://openalex.org/W2170892587","https://openalex.org/W2171349254","https://openalex.org/W2182678905","https://openalex.org/W2534348866","https://openalex.org/W2537623931","https://openalex.org/W2555846310","https://openalex.org/W2561364081","https://openalex.org/W2588469192","https://openalex.org/W2598745773","https://openalex.org/W2735084217","https://openalex.org/W2768074158","https://openalex.org/W2883350147","https://openalex.org/W2891893182","https://openalex.org/W3102250808","https://openalex.org/W4233147716","https://openalex.org/W4246938172","https://openalex.org/W4298154464"],"related_works":["https://openalex.org/W1973509935","https://openalex.org/W4389076551","https://openalex.org/W2097992793","https://openalex.org/W2107855069","https://openalex.org/W2611574733","https://openalex.org/W2140653560","https://openalex.org/W2348831795","https://openalex.org/W4312461432","https://openalex.org/W2241641394","https://openalex.org/W2514739320"],"abstract_inverted_index":{"The":[0],"free":[1],"WIPER":[2],"API":[3],"is":[4],"described":[5],"at":[6],"discovery.informatics.uab.edu/wiper/.":[7]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
