{"id":"https://openalex.org/W7123357090","doi":"https://doi.org/10.1007/s13755-025-00426-7","title":"Protein\u2013protein interaction extraction enhanced by entity semantic representation","display_name":"Protein\u2013protein interaction extraction enhanced by entity semantic representation","publication_year":2026,"publication_date":"2026-01-13","ids":{"openalex":"https://openalex.org/W7123357090","doi":"https://doi.org/10.1007/s13755-025-00426-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/41537135"},"language":"en","primary_location":{"id":"doi:10.1007/s13755-025-00426-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13755-025-00426-7","pdf_url":null,"source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12796060/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101756147","display_name":"Xinyu He","orcid":"https://orcid.org/0009-0006-5076-2208"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinyu He","raw_affiliation_strings":["School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China","institution_ids":["https://openalex.org/I153374732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122904953","display_name":"Binhe Li","orcid":null},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Binhe Li","raw_affiliation_strings":["School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China","institution_ids":["https://openalex.org/I153374732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122887510","display_name":"Xiaolu Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolu Xu","raw_affiliation_strings":["School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China","institution_ids":["https://openalex.org/I153374732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101820755","display_name":"Hongbin Lu","orcid":"https://orcid.org/0009-0002-7775-1219"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongbin Lu","raw_affiliation_strings":["School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China","institution_ids":["https://openalex.org/I153374732"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5122890751","display_name":"Jiatong Chi","orcid":null},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiatong Chi","raw_affiliation_strings":["School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Liaoning Normal University, Dalian, China","institution_ids":["https://openalex.org/I153374732"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101756147"],"corresponding_institution_ids":["https://openalex.org/I153374732"],"apc_list":{"value":2790,"currency":"EUR","value_usd":3590},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12998757,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":"1","first_page":"28","last_page":"28"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.015200000256299973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.004900000058114529,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.6116999983787537},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.47540000081062317},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4595000147819519},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4424999952316284},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.43130001425743103},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4212999939918518},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.4156000018119812},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4058000147342682},{"id":"https://openalex.org/keywords/semantic-computing","display_name":"Semantic computing","score":0.3862999975681305}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8252999782562256},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.6116999983787537},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5156000256538391},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5026999711990356},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48350000381469727},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.47540000081062317},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4595000147819519},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4424999952316284},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.43130001425743103},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4212999939918518},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.4156000018119812},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4058000147342682},{"id":"https://openalex.org/C511149849","wikidata":"https://www.wikidata.org/wiki/Q7449051","display_name":"Semantic computing","level":3,"score":0.3862999975681305},{"id":"https://openalex.org/C90312973","wikidata":"https://www.wikidata.org/wiki/Q7449052","display_name":"Semantic data model","level":2,"score":0.3601999878883362},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.3538999855518341},{"id":"https://openalex.org/C110903229","wikidata":"https://www.wikidata.org/wiki/Q7449064","display_name":"Semantic integration","level":4,"score":0.32089999318122864},{"id":"https://openalex.org/C2775955345","wikidata":"https://www.wikidata.org/wiki/Q7449071","display_name":"Semantic mapping","level":2,"score":0.3190000057220459},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.3073999881744385},{"id":"https://openalex.org/C2778828372","wikidata":"https://www.wikidata.org/wiki/Q5283209","display_name":"Distributional semantics","level":3,"score":0.3066999912261963},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.2930999994277954},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.275299996137619},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.27480000257492065},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.27320000529289246},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.2685999870300293},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2671999931335449},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.265500009059906},{"id":"https://openalex.org/C2988080768","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Semantic relation","level":3,"score":0.2500999867916107}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s13755-025-00426-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13755-025-00426-7","pdf_url":null,"source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},{"id":"pmid:41537135","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41537135","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health information science and systems","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12796060","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12796060/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Health Inf Sci Syst","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12796060","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12796060/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Health Inf Sci Syst","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.48765113949775696,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1850865022","https://openalex.org/W2048059249","https://openalex.org/W2097960255","https://openalex.org/W2121844933","https://openalex.org/W2157628440","https://openalex.org/W2166474856","https://openalex.org/W2766673096","https://openalex.org/W2911489562","https://openalex.org/W2914171828","https://openalex.org/W2960293113","https://openalex.org/W3046375318","https://openalex.org/W3189432583","https://openalex.org/W4200042293","https://openalex.org/W4233069070","https://openalex.org/W4320024282","https://openalex.org/W4366821808","https://openalex.org/W4385768160"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-16T23:16:36.188383","created_date":"2026-01-14T00:00:00"}
