{"id":"https://openalex.org/W7118642544","doi":"https://doi.org/10.1007/s13755-025-00415-w","title":"Leveraging electronic health records for atrial fibrillation cohort generation","display_name":"Leveraging electronic health records for atrial fibrillation cohort generation","publication_year":2026,"publication_date":"2026-01-07","ids":{"openalex":"https://openalex.org/W7118642544","doi":"https://doi.org/10.1007/s13755-025-00415-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/41523783"},"language":"en","primary_location":{"id":"doi:10.1007/s13755-025-00415-w","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13755-025-00415-w","pdf_url":"https://link.springer.com/content/pdf/10.1007/s13755-025-00415-w.pdf","source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s13755-025-00415-w.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114660719","display_name":"Ane Garc\u00eda Domingo-Aldama","orcid":null},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Ane G. Domingo-Aldama","raw_affiliation_strings":["University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain"],"raw_orcid":"https://orcid.org/0009-0000-8202-1099","affiliations":[{"raw_affiliation_string":"University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122121784","display_name":"Marcos Merino Prado","orcid":null},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marcos Merino Prado","raw_affiliation_strings":["University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122242833","display_name":"Alain Garc\u00eda-Olea","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092871","display_name":"Hospital de Basurto","ror":"https://ror.org/00j4pze04","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210092871","https://openalex.org/I4210125364"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alain Garc\u00eda-Olea","raw_affiliation_strings":["Basurto University Hospital, 48013 Bilbao, Vizcaya Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Basurto University Hospital, 48013 Bilbao, Vizcaya Spain","institution_ids":["https://openalex.org/I4210092871"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122153554","display_name":"Josu Goikoetxea","orcid":null},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josu Goikoetxea","raw_affiliation_strings":["University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030328561","display_name":"Koldo Gojenola","orcid":"https://orcid.org/0000-0002-2116-6611"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Koldo Gojenola","raw_affiliation_strings":["University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005074637","display_name":"Aitziber Atutxa","orcid":"https://orcid.org/0000-0003-4512-8633"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Aitziber Atutxa","raw_affiliation_strings":["University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of the Basque Country UPV/EHU, 48013 Bilbao, Vizcaya Spain","institution_ids":["https://openalex.org/I169108374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5114660719"],"corresponding_institution_ids":["https://openalex.org/I169108374"],"apc_list":{"value":2790,"currency":"EUR","value_usd":3590},"apc_paid":{"value":2790,"currency":"EUR","value_usd":3590},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03605206,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":"1","first_page":"24","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.8845999836921692,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.8845999836921692,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.017899999395012856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10065","display_name":"Atrial Fibrillation Management and Outcomes","score":0.016200000420212746,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cohort","display_name":"Cohort","score":0.6699000000953674},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.5412999987602234},{"id":"https://openalex.org/keywords/atrial-fibrillation","display_name":"Atrial fibrillation","score":0.513700008392334},{"id":"https://openalex.org/keywords/medical-record","display_name":"Medical record","score":0.49970000982284546},{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.40450000762939453},{"id":"https://openalex.org/keywords/cohort-study","display_name":"Cohort study","score":0.3610000014305115},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.35499998927116394}],"concepts":[{"id":"https://openalex.org/C72563966","wikidata":"https://www.wikidata.org/wiki/Q1303415","display_name":"Cohort","level":2,"score":0.6699000000953674},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6618000268936157},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.5412999987602234},{"id":"https://openalex.org/C2779161974","wikidata":"https://www.wikidata.org/wiki/Q815819","display_name":"Atrial fibrillation","level":2,"score":0.513700008392334},{"id":"https://openalex.org/C195910791","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Medical record","level":2,"score":0.49970000982284546},{"id":"https://openalex.org/C545542383","wikidata":"https://www.wikidata.org/wiki/Q2751242","display_name":"Medical emergency","level":1,"score":0.44510000944137573},{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.40450000762939453},{"id":"https://openalex.org/C194828623","wikidata":"https://www.wikidata.org/wiki/Q2861470","display_name":"Emergency medicine","level":1,"score":0.3767000138759613},{"id":"https://openalex.org/C201903717","wikidata":"https://www.wikidata.org/wiki/Q1778788","display_name":"Cohort study","level":2,"score":0.3610000014305115},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.35499998927116394},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.3431999981403351},{"id":"https://openalex.org/C167135981","wikidata":"https://www.wikidata.org/wiki/Q2146302","display_name":"Retrospective cohort study","level":2,"score":0.31929999589920044},{"id":"https://openalex.org/C3017977704","wikidata":"https://www.wikidata.org/wiki/Q18745135","display_name":"Health data","level":3,"score":0.30649998784065247},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.2930000126361847},{"id":"https://openalex.org/C187212893","wikidata":"https://www.wikidata.org/wiki/Q123028","display_name":"Pediatrics","level":1,"score":0.28690001368522644},{"id":"https://openalex.org/C12174686","wikidata":"https://www.wikidata.org/wiki/Q1058438","display_name":"Risk assessment","level":2,"score":0.2840999960899353},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.27869999408721924},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.2524999976158142},{"id":"https://openalex.org/C2776361769","wikidata":"https://www.wikidata.org/wiki/Q821775","display_name":"Public health surveillance","level":3,"score":0.2515999972820282}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s13755-025-00415-w","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13755-025-00415-w","pdf_url":"https://link.springer.com/content/pdf/10.1007/s13755-025-00415-w.pdf","source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},{"id":"pmid:41523783","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41523783","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health information science and systems","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12779850","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12779850/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Health Inf Sci Syst","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s13755-025-00415-w","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13755-025-00415-w","pdf_url":"https://link.springer.com/content/pdf/10.1007/s13755-025-00415-w.pdf","source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6683090329170227}],"awards":[{"id":"https://openalex.org/G1272409962","display_name":null,"funder_award_id":"MCIN/AEI/10.13039/5011 00011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3583743903","display_name":null,"funder_award_id":"IT1570-22","funder_id":"https://openalex.org/F4320321705","funder_display_name":"Eusko Jaurlaritza"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8703635341","display_name":null,"funder_award_id":"PRE_2024_1_0224","funder_id":"https://openalex.org/F4320321705","funder_display_name":"Eusko Jaurlaritza"}],"funders":[{"id":"https://openalex.org/F4320321705","display_name":"Eusko Jaurlaritza","ror":"https://ror.org/00pz2fp31"},{"id":"https://openalex.org/F4320321919","display_name":"Euskal Herriko Unibertsitatea","ror":"https://ror.org/000xsnr85"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7118642544.pdf","grobid_xml":"https://content.openalex.org/works/W7118642544.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W2021452923","https://openalex.org/W2164777277","https://openalex.org/W2602792180","https://openalex.org/W2614787793","https://openalex.org/W2768114048","https://openalex.org/W2798930216","https://openalex.org/W2911661483","https://openalex.org/W2951591277","https://openalex.org/W2975249097","https://openalex.org/W3035445675","https://openalex.org/W3045357469","https://openalex.org/W3087145289","https://openalex.org/W3182040604","https://openalex.org/W4200449004","https://openalex.org/W4210340427","https://openalex.org/W4310645210","https://openalex.org/W4361236004","https://openalex.org/W4385496630","https://openalex.org/W4387034825","https://openalex.org/W4389132345","https://openalex.org/W4390943030","https://openalex.org/W4391094305","https://openalex.org/W4399381959","https://openalex.org/W4400037556","https://openalex.org/W4402671258","https://openalex.org/W4402671296","https://openalex.org/W4402907119","https://openalex.org/W4403257570","https://openalex.org/W4404486407","https://openalex.org/W4405453405","https://openalex.org/W4409906496","https://openalex.org/W4411141175"],"related_works":[],"abstract_inverted_index":{"Purpose:":[0],"Cohort":[1],"selection":[2],"and":[3,31,46,67,80,131,175,212],"eligibility":[4],"screening":[5],"are":[6,162],"critical":[7],"in":[8,12,36],"clinical":[9,54],"research,":[10],"especially":[11],"trials":[13],"where":[14],"manual":[15],"patient":[16,78],"matching":[17],"remains":[18],"a":[19,52,163],"major":[20],"bottleneck.":[21],"This":[22],"study":[23],"investigates":[24],"the":[25,59,172],"use":[26,39],"of":[27,110,146],"Natural":[28],"Language":[29,33],"Processing":[30],"Large":[32],"Models":[34],"(LLMs)":[35],"two":[37],"real":[38],"cases,":[40],"namely":[41],"Atrial":[42],"Fibrillation":[43],"(AF)":[44],"progression":[45,118],"Hearth":[47],"Failure":[48],"(HF)":[49],"decompensation,":[50],"within":[51],"non-English":[53],"context.":[55],"We":[56],"specifically":[57],"address":[58],"following":[60],"research":[61],"questions:":[62],"(1)":[63,126,159],"Can":[64,73],"discharge":[65,120],"reports":[66,161],"NLP":[68],"support":[69],"cohort":[70,168],"selection?":[71],"(2)":[72,132,180],"LLMs":[74,88,103,135,176,182],"effectively":[75],"model":[76,155,214],"longitudinal":[77],"trajectories":[79],"temporal":[81,189],"reasoning?":[82],"(3)":[83,197],"Do":[84],"general-purpose":[85],"or":[86],"domain-adapted":[87],"outperform":[89,203],"rule-based":[90,129,173],"baselines":[91],"for":[92,116,151,166],"this":[93],"task?":[94],"(4)":[95,206],"Compared":[96],"to":[97],"large":[98],"foundation":[99],"models,":[100],"do":[101],"small-scale":[102],"offer":[104],"similar":[105],"performance?":[106],"Methods:":[107],"A":[108],"dataset":[109,145],"212":[111],"patients":[112,148],"was":[113,149],"manually":[114],"annotated":[115,150],"AF":[117],"using":[119],"reports.":[121],"Two":[122],"strategies":[123],"were":[124,195,216],"evaluated:":[125],"an":[127,143],"adapted":[128],"pipeline":[130],"zero-shot":[133],"open-source":[134],"with":[136,170,184],"varying":[137],"prompt":[138,207],"structures.":[139],"To":[140],"assess":[141],"generalizability,":[142],"additional":[144],"100":[147],"HF":[152],"decompensation.":[153],"Results:":[154],"outperformed":[156],"others.":[157],"Conclusions:":[158],"Discharge":[160],"valuable":[164],"resource":[165],"automatic":[167],"selection,":[169],"both":[171],"method":[174],"showing":[177],"promising":[178],"results.":[179],"While":[181],"struggled":[183],"long-context":[185],"inputs,":[186],"they":[187],"handled":[188],"reasoning":[190],"well":[191],"when":[192],"explicit":[193],"dates":[194],"provided.":[196],"Larger":[198],"models":[199],"did":[200],"not":[201,217],"always":[202],"smaller":[204],"ones,":[205],"language":[208],"strongly":[209],"influenced":[210],"performance,":[211],"medical":[213],"variants":[215],"consistently":[218],"superior.":[219]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2026-01-08T00:00:00"}
