{"id":"https://openalex.org/W4416527756","doi":"https://doi.org/10.1007/s13755-025-00398-8","title":"Text-based prediction of \u0131mmunohistochemical biomarkers in breast cancer using a generative large language model: a retrospective study","display_name":"Text-based prediction of \u0131mmunohistochemical biomarkers in breast cancer using a generative large language model: a retrospective study","publication_year":2025,"publication_date":"2025-11-21","ids":{"openalex":"https://openalex.org/W4416527756","doi":"https://doi.org/10.1007/s13755-025-00398-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/41281610"},"language":"en","primary_location":{"id":"doi:10.1007/s13755-025-00398-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13755-025-00398-8","pdf_url":null,"source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087185089","display_name":"Emre Utkan B\u00fcy\u00fckceran","orcid":"https://orcid.org/0000-0001-6912-7737"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Emre Utkan B\u00fcy\u00fckceran","raw_affiliation_strings":["Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-6912-7737","affiliations":[{"raw_affiliation_string":"Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079821803","display_name":"Ay\u00e7a Seyfettin","orcid":"https://orcid.org/0000-0002-8540-9432"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ay\u00e7a Seyfettin","raw_affiliation_strings":["Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0002-8540-9432","affiliations":[{"raw_affiliation_string":"Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007122832","display_name":"Andelib Babat\u00fcrk","orcid":"https://orcid.org/0000-0002-8406-6159"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Andelib Babat\u00fcrk","raw_affiliation_strings":["Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0002-8406-6159","affiliations":[{"raw_affiliation_string":"Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094279363","display_name":"Zeynep Eskalen","orcid":"https://orcid.org/0000-0001-7671-5131"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Zeynep Eskalen","raw_affiliation_strings":["Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-7671-5131","affiliations":[{"raw_affiliation_string":"Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101424032","display_name":"Murat Bulut \u00d6ZKAN","orcid":"https://orcid.org/0000-0003-4683-3772"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Murat Bulut \u00d6zkan","raw_affiliation_strings":["Department of Breast and Endocrine Surgery, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0003-4683-3772","affiliations":[{"raw_affiliation_string":"Department of Breast and Endocrine Surgery, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075139279","display_name":"Esin Kaymaz","orcid":"https://orcid.org/0000-0003-4127-6559"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Esin Kaymaz","raw_affiliation_strings":["Department of Patholgy, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0003-4127-6559","affiliations":[{"raw_affiliation_string":"Department of Patholgy, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092171625","display_name":"H\u00fcsn\u00fc Hakan Mersin","orcid":"https://orcid.org/0000-0001-7100-7750"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"H\u00fcsn\u00fc Hakan Mersin","raw_affiliation_strings":["Department of Breast and Endocrine Surgery, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-7100-7750","affiliations":[{"raw_affiliation_string":"Department of Breast and Endocrine Surgery, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023519630","display_name":"Fuldem Y\u0131ld\u0131r\u0131m D\u00f6nmez","orcid":"https://orcid.org/0000-0003-4502-106X"},"institutions":[{"id":"https://openalex.org/I4210112969","display_name":"G\u00fcven Hospital","ror":"https://ror.org/023e6jq80","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210112969"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Fuldem Y\u0131ld\u0131r\u0131m D\u00f6nmez","raw_affiliation_strings":["Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey"],"raw_orcid":"https://orcid.org/0000-0003-4502-106X","affiliations":[{"raw_affiliation_string":"Department of Radiology, Ankara G\u00fcven Hospital, Ankara, Turkey","institution_ids":["https://openalex.org/I4210112969"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5087185089"],"corresponding_institution_ids":["https://openalex.org/I4210112969"],"apc_list":{"value":2790,"currency":"EUR","value_usd":3590},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.45790459,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.7246999740600586,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.7246999740600586,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.15800000727176666,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.029600000008940697,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6406000256538391},{"id":"https://openalex.org/keywords/retrospective-cohort-study","display_name":"Retrospective cohort study","score":0.6080999970436096},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.4952000081539154},{"id":"https://openalex.org/keywords/radiomics","display_name":"Radiomics","score":0.44440001249313354},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.365200012922287},{"id":"https://openalex.org/keywords/immunohistochemistry","display_name":"Immunohistochemistry","score":0.27709999680519104}],"concepts":[{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6941999793052673},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6406000256538391},{"id":"https://openalex.org/C167135981","wikidata":"https://www.wikidata.org/wiki/Q2146302","display_name":"Retrospective cohort study","level":2,"score":0.6080999970436096},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.5117999911308289},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.4952000081539154},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.4456000030040741},{"id":"https://openalex.org/C2778559731","wikidata":"https://www.wikidata.org/wiki/Q23808793","display_name":"Radiomics","level":2,"score":0.44440001249313354},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4171000123023987},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.365200012922287},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33149999380111694},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.29030001163482666},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.27709999680519104},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2678999900817871},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.2630000114440918},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.2549999952316284},{"id":"https://openalex.org/C151956035","wikidata":"https://www.wikidata.org/wiki/Q1132755","display_name":"Logistic regression","level":2,"score":0.25099998712539673},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.25040000677108765}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s13755-025-00398-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13755-025-00398-8","pdf_url":null,"source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},{"id":"pmid:41281610","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41281610","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health information science and systems","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2030134660","https://openalex.org/W2116971418","https://openalex.org/W2117775530","https://openalex.org/W2154361640","https://openalex.org/W2174661749","https://openalex.org/W2381569410","https://openalex.org/W2763355946","https://openalex.org/W3128490437","https://openalex.org/W3177492306","https://openalex.org/W3185341429","https://openalex.org/W4213418594","https://openalex.org/W4285731608","https://openalex.org/W4307878756","https://openalex.org/W4311936994","https://openalex.org/W4323050332","https://openalex.org/W4376132115","https://openalex.org/W4388014051","https://openalex.org/W4388210462","https://openalex.org/W4399204043","https://openalex.org/W4399793079","https://openalex.org/W4401133053","https://openalex.org/W4401613980","https://openalex.org/W4404046014","https://openalex.org/W4409030975","https://openalex.org/W4409527563","https://openalex.org/W4411254634"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-11-23T00:00:00"}
