{"id":"https://openalex.org/W4412152837","doi":"https://doi.org/10.1007/s13721-025-00546-w","title":"Transcriptomic dynamics of deletion mutant two-component regulator system of Mycobacterium tuberculosis and machine learning driven novel therapeutic prediction targeting PPE4 protein","display_name":"Transcriptomic dynamics of deletion mutant two-component regulator system of Mycobacterium tuberculosis and machine learning driven novel therapeutic prediction targeting PPE4 protein","publication_year":2025,"publication_date":"2025-07-09","ids":{"openalex":"https://openalex.org/W4412152837","doi":"https://doi.org/10.1007/s13721-025-00546-w"},"language":"en","primary_location":{"id":"doi:10.1007/s13721-025-00546-w","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13721-025-00546-w","pdf_url":null,"source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082113243","display_name":"Md. Al Amin","orcid":"https://orcid.org/0000-0003-2428-9657"},"institutions":[{"id":"https://openalex.org/I41173762","display_name":"Mawlana Bhashani Science and Technology University","ror":"https://ror.org/00gvj4587","country_code":"BD","type":"education","lineage":["https://openalex.org/I41173762"]}],"countries":["BD"],"is_corresponding":true,"raw_author_name":"Md. Al Amin","raw_affiliation_strings":["Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh","institution_ids":["https://openalex.org/I41173762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095375659","display_name":"Md. Rashedur Rahman Refat","orcid":"https://orcid.org/0009-0002-6860-5551"},"institutions":[{"id":"https://openalex.org/I41173762","display_name":"Mawlana Bhashani Science and Technology University","ror":"https://ror.org/00gvj4587","country_code":"BD","type":"education","lineage":["https://openalex.org/I41173762"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Md. Rashedur Rahman Refat","raw_affiliation_strings":["Department of Information and Communication Technology, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Information and Communication Technology, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh","institution_ids":["https://openalex.org/I41173762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101233400","display_name":"Sirajul Islam","orcid":"https://orcid.org/0009-0002-5985-9437"},"institutions":[{"id":"https://openalex.org/I41173762","display_name":"Mawlana Bhashani Science and Technology University","ror":"https://ror.org/00gvj4587","country_code":"BD","type":"education","lineage":["https://openalex.org/I41173762"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Sirajul Islam","raw_affiliation_strings":["Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh","institution_ids":["https://openalex.org/I41173762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074637419","display_name":"Shamima Akhtar Sharmin","orcid":"https://orcid.org/0000-0002-2257-2494"},"institutions":[{"id":"https://openalex.org/I4400600932","display_name":"National Institute of Biotechnology","ror":"https://ror.org/01fd1kv21","country_code":null,"type":"government","lineage":["https://openalex.org/I4400600932"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Shamima Akhtar Sharmin","raw_affiliation_strings":["Environmental Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Environmental Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh","institution_ids":["https://openalex.org/I4400600932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025892081","display_name":"A. K. M. Mohiuddin","orcid":null},"institutions":[{"id":"https://openalex.org/I41173762","display_name":"Mawlana Bhashani Science and Technology University","ror":"https://ror.org/00gvj4587","country_code":"BD","type":"education","lineage":["https://openalex.org/I41173762"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"A. K. M. Mohiuddin","raw_affiliation_strings":["Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh","institution_ids":["https://openalex.org/I41173762"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091683269","display_name":"Shahin Mahmud","orcid":"https://orcid.org/0000-0002-5113-2527"},"institutions":[{"id":"https://openalex.org/I41173762","display_name":"Mawlana Bhashani Science and Technology University","ror":"https://ror.org/00gvj4587","country_code":"BD","type":"education","lineage":["https://openalex.org/I41173762"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Shahin Mahmud","raw_affiliation_strings":["Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Santosh, Tangail, 1902, Bangladesh","institution_ids":["https://openalex.org/I41173762"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5082113243"],"corresponding_institution_ids":["https://openalex.org/I41173762"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":1.5211,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.82919057,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"14","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/regulator","display_name":"Regulator","score":0.7605697512626648},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.7176254987716675},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.6656064987182617},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.6039662957191467},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5586214065551758},{"id":"https://openalex.org/keywords/master-regulator","display_name":"Master regulator","score":0.5020897388458252},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48978137969970703},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4040607213973999},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.32374751567840576},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.29380184412002563},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19443756341934204},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1942434310913086},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14168938994407654},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12969177961349487},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.11024856567382812}],"concepts":[{"id":"https://openalex.org/C6929976","wikidata":"https://www.wikidata.org/wiki/Q3771881","display_name":"Regulator","level":3,"score":0.7605697512626648},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.7176254987716675},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.6656064987182617},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.6039662957191467},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5586214065551758},{"id":"https://openalex.org/C3017607883","wikidata":"https://www.wikidata.org/wiki/Q25325354","display_name":"Master regulator","level":4,"score":0.5020897388458252},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48978137969970703},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4040607213973999},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.32374751567840576},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.29380184412002563},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19443756341934204},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1942434310913086},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14168938994407654},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12969177961349487},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.11024856567382812},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s13721-025-00546-w","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13721-025-00546-w","pdf_url":null,"source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":86,"referenced_works":["https://openalex.org/W1270834676","https://openalex.org/W1491070134","https://openalex.org/W1887624773","https://openalex.org/W1973027758","https://openalex.org/W1996924573","https://openalex.org/W1999663880","https://openalex.org/W2000951555","https://openalex.org/W2009356149","https://openalex.org/W2013257331","https://openalex.org/W2026377947","https://openalex.org/W2033333560","https://openalex.org/W2048229148","https://openalex.org/W2054585308","https://openalex.org/W2058363175","https://openalex.org/W2067174909","https://openalex.org/W2073753232","https://openalex.org/W2085398335","https://openalex.org/W2086779432","https://openalex.org/W2091020215","https://openalex.org/W2091859563","https://openalex.org/W2092840781","https://openalex.org/W2093003029","https://openalex.org/W2096864392","https://openalex.org/W2099713455","https://openalex.org/W2103912979","https://openalex.org/W2109817270","https://openalex.org/W2110940238","https://openalex.org/W2111104102","https://openalex.org/W2111380729","https://openalex.org/W2118258530","https://openalex.org/W2122342005","https://openalex.org/W2124027168","https://openalex.org/W2135230352","https://openalex.org/W2142136274","https://openalex.org/W2144871740","https://openalex.org/W2155478691","https://openalex.org/W2157710535","https://openalex.org/W2160592148","https://openalex.org/W2170711116","https://openalex.org/W2179425537","https://openalex.org/W2225338927","https://openalex.org/W2271736303","https://openalex.org/W2311711921","https://openalex.org/W2341667628","https://openalex.org/W2593436234","https://openalex.org/W2593668849","https://openalex.org/W2594183968","https://openalex.org/W2765285487","https://openalex.org/W2771278397","https://openalex.org/W2788443790","https://openalex.org/W2788776646","https://openalex.org/W2805310212","https://openalex.org/W2806547269","https://openalex.org/W2807705956","https://openalex.org/W2898391595","https://openalex.org/W2898997318","https://openalex.org/W2902328025","https://openalex.org/W2916720441","https://openalex.org/W2946412700","https://openalex.org/W2946891612","https://openalex.org/W2953076657","https://openalex.org/W2961618894","https://openalex.org/W2979328457","https://openalex.org/W2992070967","https://openalex.org/W3004663246","https://openalex.org/W3007309629","https://openalex.org/W3016428198","https://openalex.org/W3022215701","https://openalex.org/W3030862888","https://openalex.org/W3030948478","https://openalex.org/W3043023507","https://openalex.org/W3082805014","https://openalex.org/W3084378266","https://openalex.org/W3104537585","https://openalex.org/W3118437072","https://openalex.org/W3124647548","https://openalex.org/W3131693294","https://openalex.org/W3136176493","https://openalex.org/W3136918052","https://openalex.org/W3166307472","https://openalex.org/W3201230437","https://openalex.org/W4213446864","https://openalex.org/W4220901510","https://openalex.org/W4255677297","https://openalex.org/W4383912288","https://openalex.org/W4391617198"],"related_works":["https://openalex.org/W4361877701","https://openalex.org/W1974050268","https://openalex.org/W4392724881","https://openalex.org/W4361820636","https://openalex.org/W1997181197","https://openalex.org/W4410552604","https://openalex.org/W4392725784","https://openalex.org/W4400077851","https://openalex.org/W3035483361","https://openalex.org/W4367848389"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
