{"id":"https://openalex.org/W4409512653","doi":"https://doi.org/10.1007/s13721-025-00516-2","title":"Optimizing drug-target binding affinity prediction for kinase proteins: a novel all-MLP-transformer approach","display_name":"Optimizing drug-target binding affinity prediction for kinase proteins: a novel all-MLP-transformer approach","publication_year":2025,"publication_date":"2025-04-16","ids":{"openalex":"https://openalex.org/W4409512653","doi":"https://doi.org/10.1007/s13721-025-00516-2"},"language":"en","primary_location":{"id":"doi:10.1007/s13721-025-00516-2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13721-025-00516-2","pdf_url":null,"source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038610582","display_name":"Nassima Aleb","orcid":null},"institutions":[{"id":"https://openalex.org/I82401606","display_name":"Jubail Industrial College","ror":"https://ror.org/01rw40d12","country_code":"SA","type":"education","lineage":["https://openalex.org/I82401606"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Nassima Aleb","raw_affiliation_strings":["Jubail Industrial College, Jubail, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0001-6386-949X","affiliations":[{"raw_affiliation_string":"Jubail Industrial College, Jubail, Saudi Arabia","institution_ids":["https://openalex.org/I82401606"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5038610582"],"corresponding_institution_ids":["https://openalex.org/I82401606"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":2.6514,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.89759082,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"14","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.7159409523010254},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5093268156051636},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.44579410552978516},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4363973140716553},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.4156275987625122},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3743876814842224},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3585706353187561},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.29037269949913025},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.24539920687675476},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22378435730934143},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.18838858604431152},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.18290138244628906},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.11019536852836609},{"id":"https://openalex.org/keywords/voltage","display_name":"Voltage","score":0.07665270566940308}],"concepts":[{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.7159409523010254},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5093268156051636},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.44579410552978516},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4363973140716553},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.4156275987625122},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3743876814842224},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3585706353187561},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.29037269949913025},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.24539920687675476},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22378435730934143},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.18838858604431152},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.18290138244628906},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.11019536852836609},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.07665270566940308}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s13721-025-00516-2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s13721-025-00516-2","pdf_url":null,"source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":77,"referenced_works":["https://openalex.org/W1507547546","https://openalex.org/W1975147762","https://openalex.org/W1985588649","https://openalex.org/W2019657322","https://openalex.org/W2035585923","https://openalex.org/W2039350725","https://openalex.org/W2046588282","https://openalex.org/W2060139591","https://openalex.org/W2067643341","https://openalex.org/W2076048958","https://openalex.org/W2078542778","https://openalex.org/W2084139018","https://openalex.org/W2086286404","https://openalex.org/W2088794999","https://openalex.org/W2109991441","https://openalex.org/W2125592902","https://openalex.org/W2126819771","https://openalex.org/W2128879247","https://openalex.org/W2148512505","https://openalex.org/W2153838454","https://openalex.org/W2168196032","https://openalex.org/W2278744106","https://openalex.org/W2331143823","https://openalex.org/W2343107734","https://openalex.org/W2344084644","https://openalex.org/W2505297357","https://openalex.org/W2550887636","https://openalex.org/W2605952223","https://openalex.org/W2609731728","https://openalex.org/W2785947426","https://openalex.org/W2883204049","https://openalex.org/W2899788782","https://openalex.org/W2951635356","https://openalex.org/W2963858333","https://openalex.org/W2982659658","https://openalex.org/W2999554466","https://openalex.org/W3012117454","https://openalex.org/W3018980093","https://openalex.org/W3028589594","https://openalex.org/W3029836473","https://openalex.org/W3048377477","https://openalex.org/W3088849005","https://openalex.org/W3092193327","https://openalex.org/W3096561213","https://openalex.org/W3098846260","https://openalex.org/W3107134152","https://openalex.org/W3109916301","https://openalex.org/W3110901318","https://openalex.org/W3152586663","https://openalex.org/W3155404242","https://openalex.org/W3168436232","https://openalex.org/W3169201434","https://openalex.org/W3177318507","https://openalex.org/W3191666000","https://openalex.org/W3194618792","https://openalex.org/W3206585172","https://openalex.org/W4200547951","https://openalex.org/W4205510792","https://openalex.org/W4225435640","https://openalex.org/W4239469994","https://openalex.org/W4241143613","https://openalex.org/W4280512631","https://openalex.org/W4293680532","https://openalex.org/W4307479771","https://openalex.org/W4311431827","https://openalex.org/W4312094131","https://openalex.org/W4312253385","https://openalex.org/W4322745247","https://openalex.org/W4377866341","https://openalex.org/W4378473619","https://openalex.org/W4386554477","https://openalex.org/W4386715538","https://openalex.org/W4392348962","https://openalex.org/W6603884005","https://openalex.org/W6603999813","https://openalex.org/W6604387790","https://openalex.org/W6702248584"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4224009465","https://openalex.org/W4306674287","https://openalex.org/W4286629047","https://openalex.org/W4205958290","https://openalex.org/W2038043644","https://openalex.org/W2409508359","https://openalex.org/W3002327824","https://openalex.org/W4408267722","https://openalex.org/W1487182515"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
