{"id":"https://openalex.org/W4392964344","doi":"https://doi.org/10.1007/s13721-023-00440-3","title":"Drug contraindications in comorbid diseases: a protein interactome perspective","display_name":"Drug contraindications in comorbid diseases: a protein interactome perspective","publication_year":2024,"publication_date":"2024-03-19","ids":{"openalex":"https://openalex.org/W4392964344","doi":"https://doi.org/10.1007/s13721-023-00440-3"},"language":"en","primary_location":{"id":"doi:10.1007/s13721-023-00440-3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13721-023-00440-3","pdf_url":"https://link.springer.com/content/pdf/10.1007/s13721-023-00440-3.pdf","source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s13721-023-00440-3.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066367676","display_name":"Kalyani B. Karunakaran","orcid":"https://orcid.org/0000-0003-1279-7750"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN","JP"],"is_corresponding":true,"raw_author_name":"Kalyani B. Karunakaran","raw_affiliation_strings":["Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan","Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore, India"],"raw_orcid":"https://orcid.org/0000-0003-1279-7750","affiliations":[{"raw_affiliation_string":"Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore, India","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000049528","display_name":"Madhavi K. Ganapathiraju","orcid":"https://orcid.org/0000-0002-3825-0924"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210089979","display_name":"Carnegie Mellon University Qatar","ror":"https://ror.org/00az5dt38","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210089979","https://openalex.org/I74973139"]}],"countries":["QA","US"],"is_corresponding":true,"raw_author_name":"Madhavi K. Ganapathiraju","raw_affiliation_strings":["Carnegie Mellon University, Doha, Qatar","Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Doha, Qatar","institution_ids":["https://openalex.org/I4210089979"]},{"raw_affiliation_string":"Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026751784","display_name":"Sanjeev Jain","orcid":"https://orcid.org/0000-0002-9508-351X"},"institutions":[{"id":"https://openalex.org/I699696","display_name":"National Institute of Mental Health and Neurosciences","ror":"https://ror.org/0405n5e57","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I699696"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sanjeev Jain","raw_affiliation_strings":["National Institute of Mental Health and Neuro-Sciences (NIMHANS), Bangalore, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Mental Health and Neuro-Sciences (NIMHANS), Bangalore, India","institution_ids":["https://openalex.org/I699696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108072499","display_name":"Samir K. Brahmachari","orcid":null},"institutions":[{"id":"https://openalex.org/I2799463389","display_name":"Fourth Paradigm Institute","ror":"https://ror.org/03n73vq73","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I2799463389","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Samir K. Brahmachari","raw_affiliation_strings":["Academy of Scientific and Innovative Research, CSIR-4PI, Bangalore, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research, CSIR-4PI, Bangalore, India","institution_ids":["https://openalex.org/I99364266","https://openalex.org/I2799463389"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039956503","display_name":"N. Balakrishnan","orcid":"https://orcid.org/0000-0001-5842-8892"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"N. Balakrishnan","raw_affiliation_strings":["Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore, India","institution_ids":["https://openalex.org/I59270414"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000049528","https://openalex.org/A5039956503","https://openalex.org/A5066367676"],"corresponding_institution_ids":["https://openalex.org/I170201317","https://openalex.org/I22299242","https://openalex.org/I4210089979","https://openalex.org/I59270414"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":{"value":2390,"currency":"EUR","value_usd":2990},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03294549,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.9283459782600403},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.5852147936820984},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.47733786702156067},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.40986168384552},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3414360284805298},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25719714164733887},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.16661369800567627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15472543239593506},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11737340688705444},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1014995276927948}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.9283459782600403},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.5852147936820984},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.47733786702156067},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.40986168384552},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3414360284805298},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25719714164733887},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.16661369800567627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15472543239593506},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11737340688705444},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1014995276927948},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s13721-023-00440-3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13721-023-00440-3","pdf_url":"https://link.springer.com/content/pdf/10.1007/s13721-023-00440-3.pdf","source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:figshare.com:article/29624678","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal contribution"}],"best_oa_location":{"id":"doi:10.1007/s13721-023-00440-3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13721-023-00440-3","pdf_url":"https://link.springer.com/content/pdf/10.1007/s13721-023-00440-3.pdf","source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8700000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G4078151758","display_name":null,"funder_award_id":"INSA/SP/SS/2020 Dt. 01-07-2020","funder_id":"https://openalex.org/F4320310654","funder_display_name":"Indian National Science Academy"}],"funders":[{"id":"https://openalex.org/F4320310654","display_name":"Indian National Science Academy","ror":"https://ror.org/051475v86"},{"id":"https://openalex.org/F4320334468","display_name":"Qatar National Library","ror":"https://ror.org/02jv93662"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392964344.pdf"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W119503694","https://openalex.org/W1114757218","https://openalex.org/W1533942137","https://openalex.org/W1568615925","https://openalex.org/W1617495083","https://openalex.org/W1881273775","https://openalex.org/W1928565634","https://openalex.org/W1964408074","https://openalex.org/W1979845492","https://openalex.org/W2005124365","https://openalex.org/W2009313526","https://openalex.org/W2012034410","https://openalex.org/W2038782521","https://openalex.org/W2040607104","https://openalex.org/W2053125132","https://openalex.org/W2054008298","https://openalex.org/W2056782561","https://openalex.org/W2059424469","https://openalex.org/W2062533676","https://openalex.org/W2074370114","https://openalex.org/W2083191848","https://openalex.org/W2095135236","https://openalex.org/W2097226043","https://openalex.org/W2100059339","https://openalex.org/W2103733250","https://openalex.org/W2104447833","https://openalex.org/W2105524119","https://openalex.org/W2119002393","https://openalex.org/W2122203599","https://openalex.org/W2122863289","https://openalex.org/W2124996428","https://openalex.org/W2128304515","https://openalex.org/W2135306073","https://openalex.org/W2138995863","https://openalex.org/W2140764717","https://openalex.org/W2141432783","https://openalex.org/W2144656637","https://openalex.org/W2150613910","https://openalex.org/W2150845035","https://openalex.org/W2152135248","https://openalex.org/W2152415104","https://openalex.org/W2152454589","https://openalex.org/W2154896031","https://openalex.org/W2154926042","https://openalex.org/W2159675211","https://openalex.org/W2163485494","https://openalex.org/W2163575276","https://openalex.org/W2165160727","https://openalex.org/W2177154801","https://openalex.org/W2191679689","https://openalex.org/W2319839537","https://openalex.org/W2537679995","https://openalex.org/W2582306762","https://openalex.org/W2599055373","https://openalex.org/W2612467560","https://openalex.org/W2731772132","https://openalex.org/W2770381640","https://openalex.org/W2938214930","https://openalex.org/W2946173685","https://openalex.org/W2993905360","https://openalex.org/W3005296461","https://openalex.org/W3009753987","https://openalex.org/W3014823189","https://openalex.org/W3083914502","https://openalex.org/W3109937256","https://openalex.org/W3110610967","https://openalex.org/W3119022104","https://openalex.org/W3145519539","https://openalex.org/W3179876992","https://openalex.org/W4248107770","https://openalex.org/W4310782709"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4292634579","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"Abstract":[0],"Adverse":[1],"drug":[2,11,115,246],"reactions":[3],"(ADRs)":[4],"are":[5,28],"leading":[6],"causes":[7],"of":[8,24,56,145,167,201,240],"death":[9],"and":[10,13,61,67,72,80,88,94,96,101,119,134,153,162,194,198,225,229,237],"withdrawals":[12],"frequently":[14],"co-occur":[15],"with":[16,32,177,210],"comorbidities.":[17,249],"However,":[18],"systematic":[19],"studies":[20],"on":[21,26,106],"the":[22,33,50,54,57,110,142,146,155,187,218],"effects":[23],"drugs":[25,51,64,170,204],"comorbidities":[27],"lacking.":[29],"Drug":[30],"interactions":[31],"cellular":[34],"protein\u2013protein":[35],"interaction":[36],"(PPI)":[37],"network":[38],"give":[39],"rise":[40],"to":[41,180],"ADRs.":[42],"We":[43,113],"selected":[44],"6":[45],"comorbid":[46,111,241],"disease":[47,79,93,126,168,202,226],"pairs,":[48],"identified":[49],"used":[52],"in":[53,65,70,75,84,91,98,125,136,173,186,206,217,234,248],"treatment":[55],"individual":[58],"diseases":[59,242],"\u2018A\u2019":[60],"\u2018B\u2019\u2013":[62],"44":[63],"anxiety":[66],"depression,":[68],"128":[69],"asthma":[71],"hypertension,":[73],"48":[74],"chronic":[76],"obstructive":[77],"pulmonary":[78],"heart":[81],"failure,":[82],"58":[83,90],"type":[85],"2":[86],"diabetes":[87],"obesity,":[89],"Parkinson\u2019s":[92],"schizophrenia,":[95],"84":[97],"rheumatoid":[99],"arthritis":[100],"osteoporosis\u2014and":[102],"categorized":[103],"them":[104],"based":[105],"whether":[107],"they":[108],"aggravate":[109],"condition.":[112],"constructed":[114],"target":[116],"networks":[117,182,239],"(DTNs)":[118],"examined":[120],"their":[121],"enrichment":[122,233],"among":[123],"genes":[124],"A/B":[127,181],"PPI":[128,238],"networks,":[129],"expressed":[130],"across":[131],"53":[132],"tissues":[133],"involved":[135],"~":[137],"1000":[138],"pathways.":[139],"To":[140],"characterize":[141],"biological":[143],"features":[144],"DTNs,":[147],"we":[148],"performed":[149],"principal":[150],"component":[151,160],"analysis":[152],"computed":[154],"Euclidean":[156],"distance":[157],"between":[158],"DTN":[159,232],"scores":[161],"feature":[163],"loading":[164],"values.":[165],"DTNs":[166,200],"A":[169,203,219],"not":[171],"contraindicated":[172,205],"B":[174,188,207],"were":[175,208],"affiliated":[176,209],"proteins":[178,212],"common":[179,192,211,223],"or":[183,213],"uniquely":[184,215],"found":[185,216],"network,":[189,220],"similarly":[190],"regulated":[191,222],"pathways,":[193,224,235],"disease-B":[195],"specific":[196],"pathways":[197,228],"tissues.":[199,230],"those":[214],"differentially":[221],"A-specific":[227],"Hence,":[231],"tissues,":[236],"will":[243],"help":[244],"identify":[245],"contraindications":[247]},"counts_by_year":[],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
