{"id":"https://openalex.org/W4377824557","doi":"https://doi.org/10.1007/s13721-023-00418-1","title":"Genome annotation and comparative functional analysis of genomic islands in Bordetella pertussis Tohama I, Bordetella parapertussis 12822, and Bordetella bronchiseptica RB50 genomes","display_name":"Genome annotation and comparative functional analysis of genomic islands in Bordetella pertussis Tohama I, Bordetella parapertussis 12822, and Bordetella bronchiseptica RB50 genomes","publication_year":2023,"publication_date":"2023-05-23","ids":{"openalex":"https://openalex.org/W4377824557","doi":"https://doi.org/10.1007/s13721-023-00418-1"},"language":"en","primary_location":{"id":"doi:10.1007/s13721-023-00418-1","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1007/s13721-023-00418-1","pdf_url":null,"source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082501395","display_name":"Hari Om Sharn","orcid":null},"institutions":[{"id":"https://openalex.org/I223959643","display_name":"Sam Higginbottom Institute of Agriculture","ror":"https://ror.org/05ncvf986","country_code":"IN","type":"government","lineage":["https://openalex.org/I223959643"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Hari Om Sharn","raw_affiliation_strings":["Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India","institution_ids":["https://openalex.org/I223959643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054553587","display_name":"Dev Bukhsh Singh","orcid":"https://orcid.org/0000-0002-8528-2195"},"institutions":[{"id":"https://openalex.org/I229991691","display_name":"Chhatrapati Shahu Ji Maharaj University","ror":"https://ror.org/040qxz868","country_code":"IN","type":"education","lineage":["https://openalex.org/I229991691"]},{"id":"https://openalex.org/I4210108137","display_name":"Siddhartha University","ror":"https://ror.org/01hnnne31","country_code":"NP","type":"education","lineage":["https://openalex.org/I4210108137"]}],"countries":["IN","NP"],"is_corresponding":true,"raw_author_name":"Dev Bukhsh Singh","raw_affiliation_strings":["Department of Biotechnology, Institute of Biosciences and Biotechnology, Chhatrapati Shahu Ji Maharaj University, Kanpur, UP, India","Department of Biotechnology, Siddharth University, Kapilvastu, Siddharth Nagar, UP, 272202, India"],"raw_orcid":"https://orcid.org/0000-0002-8528-2195","affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Institute of Biosciences and Biotechnology, Chhatrapati Shahu Ji Maharaj University, Kanpur, UP, India","institution_ids":["https://openalex.org/I229991691"]},{"raw_affiliation_string":"Department of Biotechnology, Siddharth University, Kapilvastu, Siddharth Nagar, UP, 272202, India","institution_ids":["https://openalex.org/I4210108137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101675604","display_name":"Pramod Kumar Yadav","orcid":"https://orcid.org/0000-0001-8338-3286"},"institutions":[{"id":"https://openalex.org/I223959643","display_name":"Sam Higginbottom Institute of Agriculture","ror":"https://ror.org/05ncvf986","country_code":"IN","type":"government","lineage":["https://openalex.org/I223959643"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Pramod Kumar Yadav","raw_affiliation_strings":["Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India","institution_ids":["https://openalex.org/I223959643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002213321","display_name":"Budhayash Gautam","orcid":"https://orcid.org/0000-0003-3529-7417"},"institutions":[{"id":"https://openalex.org/I223959643","display_name":"Sam Higginbottom Institute of Agriculture","ror":"https://ror.org/05ncvf986","country_code":"IN","type":"government","lineage":["https://openalex.org/I223959643"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Budhayash Gautam","raw_affiliation_strings":["Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India","institution_ids":["https://openalex.org/I223959643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034413135","display_name":"Vipin Kumar","orcid":"https://orcid.org/0000-0002-1077-3440"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vipin Kumar","raw_affiliation_strings":["Department of Biotechnology, Hindustan College of Science and Technology, Mathura, UP, 281122, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Hindustan College of Science and Technology, Mathura, UP, 281122, India","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101929029","display_name":"Satendra Singh","orcid":"https://orcid.org/0000-0001-7211-9885"},"institutions":[{"id":"https://openalex.org/I223959643","display_name":"Sam Higginbottom Institute of Agriculture","ror":"https://ror.org/05ncvf986","country_code":"IN","type":"government","lineage":["https://openalex.org/I223959643"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Satendra Singh","raw_affiliation_strings":["Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology and Bioinformatics, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, UP, 211007, India","institution_ids":["https://openalex.org/I223959643"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5054553587","https://openalex.org/A5101929029"],"corresponding_institution_ids":["https://openalex.org/I223959643","https://openalex.org/I229991691","https://openalex.org/I4210108137"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.3408,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.57469448,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"12","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11551","display_name":"Infective Endocarditis Diagnosis and Management","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bordetella-pertussis","display_name":"Bordetella pertussis","score":0.8796628713607788},{"id":"https://openalex.org/keywords/bordetella-bronchiseptica","display_name":"Bordetella bronchiseptica","score":0.8507413864135742},{"id":"https://openalex.org/keywords/bordetella","display_name":"Bordetella","score":0.8464540839195251},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8011512160301208},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.6772480607032776},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.6732438802719116},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6024588346481323},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.5829112529754639},{"id":"https://openalex.org/keywords/whooping-cough","display_name":"Whooping cough","score":0.5503279566764832},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4939001202583313},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.49355828762054443},{"id":"https://openalex.org/keywords/genomic-island","display_name":"Genomic island","score":0.47332534193992615},{"id":"https://openalex.org/keywords/pathogenicity-island","display_name":"Pathogenicity island","score":0.44863882660865784},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.43498602509498596},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3590649366378784},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.1565546691417694},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.13440367579460144}],"concepts":[{"id":"https://openalex.org/C2777582894","wikidata":"https://www.wikidata.org/wiki/Q137103","display_name":"Bordetella pertussis","level":3,"score":0.8796628713607788},{"id":"https://openalex.org/C2777107318","wikidata":"https://www.wikidata.org/wiki/Q137446","display_name":"Bordetella bronchiseptica","level":3,"score":0.8507413864135742},{"id":"https://openalex.org/C2777824465","wikidata":"https://www.wikidata.org/wiki/Q893440","display_name":"Bordetella","level":4,"score":0.8464540839195251},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8011512160301208},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.6772480607032776},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.6732438802719116},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6024588346481323},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.5829112529754639},{"id":"https://openalex.org/C2779214499","wikidata":"https://www.wikidata.org/wiki/Q134859","display_name":"Whooping cough","level":3,"score":0.5503279566764832},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4939001202583313},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.49355828762054443},{"id":"https://openalex.org/C2780258820","wikidata":"https://www.wikidata.org/wiki/Q5195454","display_name":"Genomic island","level":4,"score":0.47332534193992615},{"id":"https://openalex.org/C62130838","wikidata":"https://www.wikidata.org/wiki/Q5196163","display_name":"Pathogenicity island","level":4,"score":0.44863882660865784},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.43498602509498596},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3590649366378784},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.1565546691417694},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.13440367579460144},{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s13721-023-00418-1","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1007/s13721-023-00418-1","pdf_url":null,"source":{"id":"https://openalex.org/S4210178532","display_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","issn_l":"2192-6662","issn":["2192-6662","2192-6670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310321666","host_organization_name":"Springer Vienna","host_organization_lineage":["https://openalex.org/P4310321666","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Vienna","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Network Modeling Analysis in Health Informatics and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.8500000238418579}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1895949598","https://openalex.org/W1898779309","https://openalex.org/W1964752634","https://openalex.org/W1968146772","https://openalex.org/W1986708244","https://openalex.org/W1994670764","https://openalex.org/W2013219901","https://openalex.org/W2072967720","https://openalex.org/W2080631109","https://openalex.org/W2088258525","https://openalex.org/W2108473040","https://openalex.org/W2115095549","https://openalex.org/W2119999417","https://openalex.org/W2121695290","https://openalex.org/W2137678717","https://openalex.org/W2143931391","https://openalex.org/W2151183612","https://openalex.org/W2151814510","https://openalex.org/W2155534524","https://openalex.org/W2323218080","https://openalex.org/W2527330379","https://openalex.org/W2544493586","https://openalex.org/W2582308676","https://openalex.org/W2586431874","https://openalex.org/W2610656577","https://openalex.org/W2807480080","https://openalex.org/W2903596886","https://openalex.org/W3014835078","https://openalex.org/W3102825914","https://openalex.org/W3121983663","https://openalex.org/W3126611225","https://openalex.org/W4210975826","https://openalex.org/W4321372998"],"related_works":["https://openalex.org/W2030270780","https://openalex.org/W4380290415","https://openalex.org/W2438637100","https://openalex.org/W2083832171","https://openalex.org/W2075301522","https://openalex.org/W4230278641","https://openalex.org/W4234224553","https://openalex.org/W2137127559","https://openalex.org/W2014087452","https://openalex.org/W2332335643"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
