{"id":"https://openalex.org/W2128323588","doi":"https://doi.org/10.1007/s13173-011-0031-9","title":"A systematic review of named entity recognition in biomedical texts","display_name":"A systematic review of named entity recognition in biomedical texts","publication_year":2011,"publication_date":"2011-03-02","ids":{"openalex":"https://openalex.org/W2128323588","doi":"https://doi.org/10.1007/s13173-011-0031-9","mag":"2128323588"},"language":"en","primary_location":{"id":"doi:10.1007/s13173-011-0031-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13173-011-0031-9","pdf_url":"https://journal-bcs.springeropen.com/track/pdf/10.1007/s13173-011-0031-9","source":{"id":"https://openalex.org/S69801987","display_name":"Journal of the Brazilian Computer Society","issn_l":"0104-6500","issn":["0104-6500","1678-4804"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the Brazilian Computer Society","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://journal-bcs.springeropen.com/track/pdf/10.1007/s13173-011-0031-9","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109887570","display_name":"Rodrigo Goulart","orcid":null},"institutions":[{"id":"https://openalex.org/I145689991","display_name":"Universidade Feevale","ror":"https://ror.org/05gefd119","country_code":"BR","type":"education","lineage":["https://openalex.org/I145689991"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Rodrigo Rafael Villarreal Goulart","raw_affiliation_strings":["Feevale University, Novo Hamburgo, Brazil","Feevale University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Feevale University, Novo Hamburgo, Brazil","institution_ids":["https://openalex.org/I145689991"]},{"raw_affiliation_string":"Feevale University","institution_ids":["https://openalex.org/I145689991"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109129300","display_name":"Vera L\u00facia Strube de Lima","orcid":null},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Vera L\u00facia Strube\u00a0de\u00a0Lima","raw_affiliation_strings":["PUCRS, Porto Alegre, Brazil","PUCRS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PUCRS, Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"PUCRS","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103893163","display_name":"Clarissa Xavier","orcid":null},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Clarissa Castell\u00e3 Xavier","raw_affiliation_strings":["PUCRS, Porto Alegre, Brazil","PUCRS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PUCRS, Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"PUCRS","institution_ids":["https://openalex.org/I45643870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5109887570"],"corresponding_institution_ids":["https://openalex.org/I145689991"],"apc_list":null,"apc_paid":null,"fwci":0.266,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.59585048,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"17","issue":"2","first_page":"103","last_page":"116"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.8043221235275269},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7069014310836792},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5955306887626648},{"id":"https://openalex.org/keywords/named-entity","display_name":"Named entity","score":0.5607558488845825},{"id":"https://openalex.org/keywords/aside","display_name":"Aside","score":0.5343472361564636},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.453663170337677},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4525442123413086},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42618516087532043},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.4112780690193176},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.2849186360836029},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.20615997910499573},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.1292383074760437},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.11310151219367981},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06309518218040466}],"concepts":[{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.8043221235275269},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7069014310836792},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5955306887626648},{"id":"https://openalex.org/C2777889803","wikidata":"https://www.wikidata.org/wiki/Q25047676","display_name":"Named entity","level":2,"score":0.5607558488845825},{"id":"https://openalex.org/C2778120072","wikidata":"https://www.wikidata.org/wiki/Q2858150","display_name":"Aside","level":2,"score":0.5343472361564636},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.453663170337677},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4525442123413086},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42618516087532043},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.4112780690193176},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.2849186360836029},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.20615997910499573},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.1292383074760437},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.11310151219367981},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06309518218040466},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s13173-011-0031-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13173-011-0031-9","pdf_url":"https://journal-bcs.springeropen.com/track/pdf/10.1007/s13173-011-0031-9","source":{"id":"https://openalex.org/S69801987","display_name":"Journal of the Brazilian Computer Society","issn_l":"0104-6500","issn":["0104-6500","1678-4804"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the Brazilian Computer Society","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1007/s13173-011-0031-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s13173-011-0031-9","pdf_url":"https://journal-bcs.springeropen.com/track/pdf/10.1007/s13173-011-0031-9","source":{"id":"https://openalex.org/S69801987","display_name":"Journal of the Brazilian Computer Society","issn_l":"0104-6500","issn":["0104-6500","1678-4804"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the Brazilian Computer Society","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128323588.pdf","grobid_xml":"https://content.openalex.org/works/W2128323588.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W182831726","https://openalex.org/W1528012351","https://openalex.org/W1553529581","https://openalex.org/W1574862351","https://openalex.org/W1579838312","https://openalex.org/W1602461138","https://openalex.org/W1604938182","https://openalex.org/W1747861911","https://openalex.org/W1817582244","https://openalex.org/W1969887143","https://openalex.org/W1974701639","https://openalex.org/W1975481163","https://openalex.org/W1977223481","https://openalex.org/W2020224194","https://openalex.org/W2037374844","https://openalex.org/W2047782770","https://openalex.org/W2049240985","https://openalex.org/W2070786957","https://openalex.org/W2094723464","https://openalex.org/W2096876337","https://openalex.org/W2098332568","https://openalex.org/W2101265630","https://openalex.org/W2106148045","https://openalex.org/W2114290255","https://openalex.org/W2127239015","https://openalex.org/W2128278816","https://openalex.org/W2130903762","https://openalex.org/W2134135406","https://openalex.org/W2145884477","https://openalex.org/W2147880316","https://openalex.org/W2157870551","https://openalex.org/W2163107094","https://openalex.org/W2166878809","https://openalex.org/W2168894761","https://openalex.org/W2169986726","https://openalex.org/W2739698496","https://openalex.org/W2751318774","https://openalex.org/W2966207845","https://openalex.org/W4244921287","https://openalex.org/W4250861602"],"related_works":["https://openalex.org/W2186562580","https://openalex.org/W2155874911","https://openalex.org/W3000685722","https://openalex.org/W4255258373","https://openalex.org/W2032007337","https://openalex.org/W1884363728","https://openalex.org/W4253099099","https://openalex.org/W4386977977","https://openalex.org/W2901060953","https://openalex.org/W2899463504"],"abstract_inverted_index":{"Abstract":[0],"Biomedical":[1,74],"Named":[2,25],"Entities":[3],"(NEs)":[4],"are":[5,91],"phrases":[6,10],"or":[7,15],"combinations":[8],"of":[9,17,31,40,73],"that":[11,93],"denote":[12],"specific":[13],"objects":[14,18],"groups":[16],"in":[19,36,50,53,70,100],"the":[20,32,37,54,67,71,86,101],"biomedical":[21,41,51],"literature.":[22],"Research":[23],"on":[24],"Entity":[26],"Recognition":[27],"(NER)":[28],"is":[29],"one":[30],"most":[33],"disseminated":[34],"activities":[35],"automatic":[38],"processing":[39],"scientific":[42],"articles.":[43],"We":[44],"analyzed":[45],"articles":[46],"relevant":[47],"to":[48,58],"NER":[49,81],"texts,":[52],"period":[55],"from":[56,85],"2007":[57],"2009,":[59],"through":[60],"a":[61,80],"systematic":[62],"review.":[63],"The":[64],"results":[65],"identify":[66],"main":[68],"methods":[69],"recognition":[72],"NEs,":[75],"features":[76],"and":[77],"methodologies":[78],"for":[79,97],"system":[82],"implementation.":[83],"Aside":[84],"tendencies":[87],"identified,":[88],"some":[89],"gaps":[90],"detected":[92],"may":[94],"constitute":[95],"opportunities":[96],"new":[98],"studies":[99],"area.":[102]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2013,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
