{"id":"https://openalex.org/W2066487562","doi":"https://doi.org/10.1007/s12559-012-9159-y","title":"Reverse Engineering of Biochemical Reaction Networks Using Co-evolution with Eng-Genes","display_name":"Reverse Engineering of Biochemical Reaction Networks Using Co-evolution with Eng-Genes","publication_year":2012,"publication_date":"2012-07-02","ids":{"openalex":"https://openalex.org/W2066487562","doi":"https://doi.org/10.1007/s12559-012-9159-y","mag":"2066487562"},"language":"en","primary_location":{"id":"doi:10.1007/s12559-012-9159-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12559-012-9159-y","pdf_url":null,"source":{"id":"https://openalex.org/S133078663","display_name":"Cognitive Computation","issn_l":"1866-9956","issn":["1866-9956","1866-9964"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cognitive Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086943557","display_name":"Padhraig Gormley","orcid":"https://orcid.org/0000-0002-8908-6968"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Padhraig Gormley","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","School of Electronics, Electrical Engineering and Computer Science, Queen's University, Belfast, Belfast, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen's University, Belfast, Belfast, UK#TAB#","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456957","display_name":"Kang Li","orcid":"https://orcid.org/0000-0001-6657-0522"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kang Li","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","School of Electronics, Electrical Engineering and Computer Science, Queen's University, Belfast, Belfast, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen's University, Belfast, Belfast, UK#TAB#","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022724143","display_name":"Olaf Wolkenhauer","orcid":"https://orcid.org/0000-0001-6105-2937"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Olaf Wolkenhauer","raw_affiliation_strings":["Systems Biology and Bioinformatics Group, Department of Computer Science, University of Rostock, Albert Einstein Str. 21, 18051, Rostock, Germany","Systems Biology and Bioinformatics Group, Department of Computer Science, University of Rostock. Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Systems Biology and Bioinformatics Group, Department of Computer Science, University of Rostock, Albert Einstein Str. 21, 18051, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]},{"raw_affiliation_string":"Systems Biology and Bioinformatics Group, Department of Computer Science, University of Rostock. Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105838949","display_name":"G.W. Irwin","orcid":null},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"George W. Irwin","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","School of Electronics, Electrical Engineering and Computer Science, Queen's University, Belfast, Belfast, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen's University, Belfast, Belfast, UK#TAB#","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100735340","display_name":"Dajun Du","orcid":"https://orcid.org/0000-0003-2979-1507"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]},{"id":"https://openalex.org/I113940042","display_name":"Shanghai University","ror":"https://ror.org/006teas31","country_code":"CN","type":"education","lineage":["https://openalex.org/I113940042"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Dajun Du","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","Shanghai Key Laboratory of Power Station Automation Technology, School of Mechatronical Engineering and Automation, Shanghai University, Shanghai, 200072, China","Queen's University Belfast","Shanghai University"],"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast, Stranmillis Road, Belfast, BT9 5AH, UK","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Power Station Automation Technology, School of Mechatronical Engineering and Automation, Shanghai University, Shanghai, 200072, China","institution_ids":["https://openalex.org/I113940042"]},{"raw_affiliation_string":"Queen's University Belfast","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Shanghai University","institution_ids":["https://openalex.org/I113940042"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086943557"],"corresponding_institution_ids":["https://openalex.org/I126231945"],"apc_list":{"value":2190,"currency":"EUR","value_usd":2790},"apc_paid":null,"fwci":0.4022,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.62218878,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"5","issue":"1","first_page":"106","last_page":"118"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.7386033535003662},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.718205988407135},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.6862415075302124},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.629885733127594},{"id":"https://openalex.org/keywords/convergence","display_name":"Convergence (economics)","score":0.5626919269561768},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5284901857376099},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.45749080181121826},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.43777868151664734},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38078436255455017},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31007158756256104}],"concepts":[{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.7386033535003662},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.718205988407135},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.6862415075302124},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.629885733127594},{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.5626919269561768},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5284901857376099},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.45749080181121826},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.43777868151664734},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38078436255455017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31007158756256104},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s12559-012-9159-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12559-012-9159-y","pdf_url":null,"source":{"id":"https://openalex.org/S133078663","display_name":"Cognitive Computation","issn_l":"1866-9956","issn":["1866-9956","1866-9964"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cognitive Computation","raw_type":"journal-article"},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/f516f2c0-725e-41db-9759-bb79442af59a","is_oa":false,"landing_page_url":"https://pure.qub.ac.uk/en/publications/f516f2c0-725e-41db-9759-bb79442af59a","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gormley, P, Li, K, Wolkenhauer, O, Irwin, G & Du, D 2013, 'Reverse engineering of biochemical reaction networks using co-evolution with eng-genes', Cognitive Computation, vol. 5, no. 1, pp. 106-118. https://doi.org/10.1007/s12559-012-9159-y","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320240","display_name":"Research Councils UK","ror":"https://ror.org/00dq2kk65"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1482637285","https://openalex.org/W1603664789","https://openalex.org/W1886554846","https://openalex.org/W1977692160","https://openalex.org/W1977699614","https://openalex.org/W1977868384","https://openalex.org/W1978486653","https://openalex.org/W1983407764","https://openalex.org/W1992165506","https://openalex.org/W1996993801","https://openalex.org/W1999902057","https://openalex.org/W2001431571","https://openalex.org/W2007471837","https://openalex.org/W2015502339","https://openalex.org/W2021919383","https://openalex.org/W2022165721","https://openalex.org/W2038766854","https://openalex.org/W2040291122","https://openalex.org/W2051528158","https://openalex.org/W2054300546","https://openalex.org/W2058486367","https://openalex.org/W2086776326","https://openalex.org/W2088343152","https://openalex.org/W2093828424","https://openalex.org/W2100169396","https://openalex.org/W2100211715","https://openalex.org/W2102282044","https://openalex.org/W2103946427","https://openalex.org/W2110371102","https://openalex.org/W2114382052","https://openalex.org/W2118891267","https://openalex.org/W2123969803","https://openalex.org/W2124003876","https://openalex.org/W2129737673","https://openalex.org/W2131067724","https://openalex.org/W2135000328","https://openalex.org/W2138148774","https://openalex.org/W2139922916","https://openalex.org/W2141239733","https://openalex.org/W2144315657","https://openalex.org/W2167457467","https://openalex.org/W2483537127","https://openalex.org/W4238726034"],"related_works":["https://openalex.org/W2363831530","https://openalex.org/W2363845219","https://openalex.org/W2381057835","https://openalex.org/W1789649838","https://openalex.org/W4296209631","https://openalex.org/W1780668307","https://openalex.org/W1984362519","https://openalex.org/W2051831113","https://openalex.org/W2650054517","https://openalex.org/W2362738525"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
