{"id":"https://openalex.org/W7133301863","doi":"https://doi.org/10.1007/s12064-026-00460-3","title":"CAGAD: dynamic community attention for prediction gene regulatory network","display_name":"CAGAD: dynamic community attention for prediction gene regulatory network","publication_year":2026,"publication_date":"2026-03-03","ids":{"openalex":"https://openalex.org/W7133301863","doi":"https://doi.org/10.1007/s12064-026-00460-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/41774282"},"language":"en","primary_location":{"id":"doi:10.1007/s12064-026-00460-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12064-026-00460-3","pdf_url":null,"source":{"id":"https://openalex.org/S12148721","display_name":"Theory in Biosciences","issn_l":"1431-7613","issn":["1431-7613","1611-7530"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in Biosciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054280154","display_name":"Sher Ali","orcid":null},"institutions":[{"id":"https://openalex.org/I166455938","display_name":"University of Babylon","ror":"https://ror.org/0170edc15","country_code":"IQ","type":"education","lineage":["https://openalex.org/I166455938"]},{"id":"https://openalex.org/I501048437","display_name":"Al-Muthanna University","ror":"https://ror.org/03877wr45","country_code":"IQ","type":"education","lineage":["https://openalex.org/I501048437"]}],"countries":["IQ"],"is_corresponding":true,"raw_author_name":"Sura I. Mohammed Ali","raw_affiliation_strings":["Department of Mathematics and Computer Applications, College of Science, Al-Muthanna University, Sumaway, 66001, Iraq. suraibrahimm.sw@student.uobabylon.edu.iq","Department of Software, College of Information Technology, University of Babylon, Babylon, 51001, Iraq. suraibrahimm.sw@student.uobabylon.edu.iq"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Applications, College of Science, Al-Muthanna University, Sumaway, 66001, Iraq. suraibrahimm.sw@student.uobabylon.edu.iq","institution_ids":["https://openalex.org/I501048437"]},{"raw_affiliation_string":"Department of Software, College of Information Technology, University of Babylon, Babylon, 51001, Iraq. suraibrahimm.sw@student.uobabylon.edu.iq","institution_ids":["https://openalex.org/I166455938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5128001209","display_name":"Sura Zaki AlRashid","orcid":null},"institutions":[{"id":"https://openalex.org/I166455938","display_name":"University of Babylon","ror":"https://ror.org/0170edc15","country_code":"IQ","type":"education","lineage":["https://openalex.org/I166455938"]}],"countries":["IQ"],"is_corresponding":false,"raw_author_name":"Sura Zaki AlRashid","raw_affiliation_strings":["Department of Software, College of Information Technology, University of Babylon, Babylon, 51001, Iraq"],"affiliations":[{"raw_affiliation_string":"Department of Software, College of Information Technology, University of Babylon, Babylon, 51001, Iraq","institution_ids":["https://openalex.org/I166455938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5054280154"],"corresponding_institution_ids":["https://openalex.org/I166455938","https://openalex.org/I501048437"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.80144682,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"145","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7329000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7329000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.1387999951839447,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.0348999984562397,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9344000220298767},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5683000087738037},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5582000017166138},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.51419997215271},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48260000348091125},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.46070000529289246},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.421999990940094}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9344000220298767},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7232999801635742},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.621399998664856},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5683000087738037},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5629000067710876},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5582000017166138},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.51419997215271},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48260000348091125},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.46070000529289246},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42730000615119934},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.421999990940094},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.3334999978542328},{"id":"https://openalex.org/C2778136018","wikidata":"https://www.wikidata.org/wiki/Q10350689","display_name":"Predictive power","level":2,"score":0.3278000056743622},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.3052000105381012},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.295199990272522},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.2833000123500824},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.2827000021934509},{"id":"https://openalex.org/C2991772755","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Gene interaction","level":3,"score":0.26100000739097595},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.2581999897956848}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s12064-026-00460-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12064-026-00460-3","pdf_url":null,"source":{"id":"https://openalex.org/S12148721","display_name":"Theory in Biosciences","issn_l":"1431-7613","issn":["1431-7613","1611-7530"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in Biosciences","raw_type":"journal-article"},{"id":"pmid:41774282","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41774282","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in biosciences = Theorie in den Biowissenschaften","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1984284869","https://openalex.org/W2060300932","https://openalex.org/W2163485494","https://openalex.org/W2904192038","https://openalex.org/W2944545583","https://openalex.org/W2951424836","https://openalex.org/W2969742128","https://openalex.org/W3009077094","https://openalex.org/W3197759119","https://openalex.org/W4284883273","https://openalex.org/W4308831845","https://openalex.org/W4312020017","https://openalex.org/W4361803714","https://openalex.org/W4366464224","https://openalex.org/W4388870182","https://openalex.org/W4390116356","https://openalex.org/W4390176945","https://openalex.org/W4393038913","https://openalex.org/W4394014672","https://openalex.org/W4399571068","https://openalex.org/W4405119756","https://openalex.org/W4407034331","https://openalex.org/W4410808041","https://openalex.org/W4412103302","https://openalex.org/W4412654252","https://openalex.org/W4413930409","https://openalex.org/W4414003434","https://openalex.org/W4414048658","https://openalex.org/W4414371750"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-03-04T07:09:34.246503","created_date":"2026-03-04T00:00:00"}