{"id":"https://openalex.org/W2069265601","doi":"https://doi.org/10.1007/s12064-011-0139-7","title":"Evaluation of a sophisticated SCFG design for RNA secondary structure prediction","display_name":"Evaluation of a sophisticated SCFG design for RNA secondary structure prediction","publication_year":2011,"publication_date":"2011-12-01","ids":{"openalex":"https://openalex.org/W2069265601","doi":"https://doi.org/10.1007/s12064-011-0139-7","mag":"2069265601","pmid":"https://pubmed.ncbi.nlm.nih.gov/22135038"},"language":"en","primary_location":{"id":"doi:10.1007/s12064-011-0139-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12064-011-0139-7","pdf_url":null,"source":{"id":"https://openalex.org/S12148721","display_name":"Theory in Biosciences","issn_l":"1431-7613","issn":["1431-7613","1611-7530"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in Biosciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024961278","display_name":"Markus E. Nebel","orcid":null},"institutions":[{"id":"https://openalex.org/I153267046","display_name":"University of Kaiserslautern","ror":"https://ror.org/04zrf7b53","country_code":"DE","type":"education","lineage":["https://openalex.org/I153267046"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus E. Nebel","raw_affiliation_strings":["Department of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany. nebel@cs.uni-kl.de","Dept. of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany. nebel@cs.uni-kl.de","institution_ids":["https://openalex.org/I153267046"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany","institution_ids":["https://openalex.org/I153267046"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002333699","display_name":"Anika Scheid","orcid":null},"institutions":[{"id":"https://openalex.org/I153267046","display_name":"University of Kaiserslautern","ror":"https://ror.org/04zrf7b53","country_code":"DE","type":"education","lineage":["https://openalex.org/I153267046"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Anika Scheid","raw_affiliation_strings":["Department of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany","Dept. of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany","institution_ids":["https://openalex.org/I153267046"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Kaiserslautern, Kaiserslautern, Germany","institution_ids":["https://openalex.org/I153267046"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5002333699"],"corresponding_institution_ids":["https://openalex.org/I153267046"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":1.4598,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.80991187,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"130","issue":"4","first_page":"313","last_page":"336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.6875002980232239},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.627924919128418},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5535467863082886},{"id":"https://openalex.org/keywords/synchronous-context-free-grammar","display_name":"Synchronous context-free grammar","score":0.4896319508552551},{"id":"https://openalex.org/keywords/partition-function","display_name":"Partition function (quantum field theory)","score":0.46986326575279236},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45253995060920715},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4413607120513916},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40859752893447876},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.37346357107162476},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.36351341009140015},{"id":"https://openalex.org/keywords/rule-based-machine-translation","display_name":"Rule-based machine translation","score":0.22116026282310486},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11650589108467102}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.6875002980232239},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.627924919128418},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5535467863082886},{"id":"https://openalex.org/C51802942","wikidata":"https://www.wikidata.org/wiki/Q7662211","display_name":"Synchronous context-free grammar","level":4,"score":0.4896319508552551},{"id":"https://openalex.org/C2778401447","wikidata":"https://www.wikidata.org/wiki/Q7140637","display_name":"Partition function (quantum field theory)","level":2,"score":0.46986326575279236},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45253995060920715},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4413607120513916},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40859752893447876},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.37346357107162476},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.36351341009140015},{"id":"https://openalex.org/C53893814","wikidata":"https://www.wikidata.org/wiki/Q7378909","display_name":"Rule-based machine translation","level":2,"score":0.22116026282310486},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11650589108467102},{"id":"https://openalex.org/C24687705","wikidata":"https://www.wikidata.org/wiki/Q3753284","display_name":"Example-based machine translation","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1007/s12064-011-0139-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12064-011-0139-7","pdf_url":null,"source":{"id":"https://openalex.org/S12148721","display_name":"Theory in Biosciences","issn_l":"1431-7613","issn":["1431-7613","1611-7530"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in Biosciences","raw_type":"journal-article"},{"id":"pmid:22135038","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22135038","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in biosciences = Theorie in den Biowissenschaften","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.471.8560","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.471.8560","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://wwwagak.cs.uni-kl.de/downloads/papers/Evaluation_of_a_Sophisticated_SCFG_Design_for_RNA_Secondary_Structure_Prediction.pdf","raw_type":"text"},{"id":"pmh:oai:pub.librecat.org:2910022","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2910022","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nebel M, Scheid A. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction. &lt;em&gt;Theory in Biosciences&lt;/em&gt;. 2011;130(4):313--336.","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.7900000214576721,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W204479109","https://openalex.org/W1519185585","https://openalex.org/W1543796220","https://openalex.org/W1583697620","https://openalex.org/W1762346172","https://openalex.org/W1861164398","https://openalex.org/W1976312746","https://openalex.org/W1984675364","https://openalex.org/W1994958179","https://openalex.org/W2000191287","https://openalex.org/W2005487487","https://openalex.org/W2009818318","https://openalex.org/W2011368877","https://openalex.org/W2017313617","https://openalex.org/W2020031208","https://openalex.org/W2025763720","https://openalex.org/W2042881722","https://openalex.org/W2045895660","https://openalex.org/W2051713039","https://openalex.org/W2054931730","https://openalex.org/W2056871360","https://openalex.org/W2057042076","https://openalex.org/W2073791458","https://openalex.org/W2079999791","https://openalex.org/W2088938573","https://openalex.org/W2096669340","https://openalex.org/W2097508084","https://openalex.org/W2101497682","https://openalex.org/W2102017611","https://openalex.org/W2102046276","https://openalex.org/W2103250001","https://openalex.org/W2104141342","https://openalex.org/W2106293441","https://openalex.org/W2107432340","https://openalex.org/W2109638684","https://openalex.org/W2111778812","https://openalex.org/W2117431427","https://openalex.org/W2123241418","https://openalex.org/W2125585709","https://openalex.org/W2133876293","https://openalex.org/W2135261987","https://openalex.org/W2137640371","https://openalex.org/W2141157874","https://openalex.org/W2153140501","https://openalex.org/W2155060633","https://openalex.org/W2158381555","https://openalex.org/W2163638609","https://openalex.org/W2167673850","https://openalex.org/W2911246871","https://openalex.org/W4234879553","https://openalex.org/W4234887284","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4385457841","https://openalex.org/W2581348958","https://openalex.org/W4367048159","https://openalex.org/W962838231","https://openalex.org/W1861164398","https://openalex.org/W2603660241","https://openalex.org/W2122623226","https://openalex.org/W2413926952","https://openalex.org/W1507306892","https://openalex.org/W1246461931"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
