{"id":"https://openalex.org/W2156206237","doi":"https://doi.org/10.1007/s12064-008-0030-3","title":"Topology-based abstraction of complex biological systems: application to the Golgi apparatus","display_name":"Topology-based abstraction of complex biological systems: application to the Golgi apparatus","publication_year":2008,"publication_date":"2008-05-01","ids":{"openalex":"https://openalex.org/W2156206237","doi":"https://doi.org/10.1007/s12064-008-0030-3","mag":"2156206237","pmid":"https://pubmed.ncbi.nlm.nih.gov/18458977"},"language":"en","primary_location":{"id":"doi:10.1007/s12064-008-0030-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12064-008-0030-3","pdf_url":null,"source":{"id":"https://openalex.org/S12148721","display_name":"Theory in Biosciences","issn_l":"1431-7613","issn":["1431-7613","1611-7530"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in Biosciences","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052461545","display_name":"Mathieu Poudret","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I32881790","display_name":"Universit\u00e9 de Poitiers","ror":"https://ror.org/04xhy8q59","country_code":"FR","type":"education","lineage":["https://openalex.org/I32881790"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathieu Poudret","raw_affiliation_strings":["XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France. poudret@sic.univ-poitiers.fr","XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France"],"affiliations":[{"raw_affiliation_string":"XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France. poudret@sic.univ-poitiers.fr","institution_ids":["https://openalex.org/I32881790","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France","institution_ids":["https://openalex.org/I32881790","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027896307","display_name":"Agn\u00e8s Arnould","orcid":"https://orcid.org/0000-0003-2075-1533"},"institutions":[{"id":"https://openalex.org/I32881790","display_name":"Universit\u00e9 de Poitiers","ror":"https://ror.org/04xhy8q59","country_code":"FR","type":"education","lineage":["https://openalex.org/I32881790"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Agn\u00e8s Arnould","raw_affiliation_strings":["XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France"],"affiliations":[{"raw_affiliation_string":"XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France","institution_ids":["https://openalex.org/I32881790","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067996234","display_name":"Jean\u2010Paul Comet","orcid":"https://orcid.org/0000-0002-6681-3501"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jean-Paul Comet","raw_affiliation_strings":["I3S UMR 6070 CNRS, Universit\u00e9 de Nice-Sophia-Antipolis, 06903, Sophia-Antipolis, France"],"affiliations":[{"raw_affiliation_string":"I3S UMR 6070 CNRS, Universit\u00e9 de Nice-Sophia-Antipolis, 06903, Sophia-Antipolis, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004536831","display_name":"Pascale Le Gall","orcid":"https://orcid.org/0000-0002-8955-6835"},"institutions":[{"id":"https://openalex.org/I216852786","display_name":"\u00c9cole Centrale Paris","ror":"https://ror.org/00v0y5771","country_code":"FR","type":"education","lineage":["https://openalex.org/I216852786"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pascale Le Gall","raw_affiliation_strings":["MAS-\u00c9cole Centrale Paris, Grande Voie des Vignes, 92295, Ch\u00e2tenay-Malabry, France"],"affiliations":[{"raw_affiliation_string":"MAS-\u00c9cole Centrale Paris, Grande Voie des Vignes, 92295, Ch\u00e2tenay-Malabry, France","institution_ids":["https://openalex.org/I216852786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006077420","display_name":"Philippe Meseure","orcid":"https://orcid.org/0000-0001-6652-8738"},"institutions":[{"id":"https://openalex.org/I32881790","display_name":"Universit\u00e9 de Poitiers","ror":"https://ror.org/04xhy8q59","country_code":"FR","type":"education","lineage":["https://openalex.org/I32881790"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Philippe Meseure","raw_affiliation_strings":["XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France"],"affiliations":[{"raw_affiliation_string":"XLIM-SIC UMR 6172 CNRS, Universit\u00e9 de Poitiers, 86962, Futuroscope, France","institution_ids":["https://openalex.org/I32881790","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052082741","display_name":"Fran\u00e7ois K\u00e9p\u00e8s","orcid":"https://orcid.org/0000-0001-5766-4957"},"institutions":[{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois K\u00e9p\u00e8s","raw_affiliation_strings":["Programme d\u2019\u00c9pig\u00e9nomique, G\u00e9nopole, 91000, \u00c9vry, France"],"affiliations":[{"raw_affiliation_string":"Programme d\u2019\u00c9pig\u00e9nomique, G\u00e9nopole, 91000, \u00c9vry, France","institution_ids":["https://openalex.org/I4210128926"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5067996234"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I201841394"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":1.1168,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.8585375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"127","issue":"2","first_page":"79","last_page":"88"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10617","display_name":"Cellular transport and secretion","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.7575152516365051},{"id":"https://openalex.org/keywords/golgi-apparatus","display_name":"Golgi apparatus","score":0.6682932376861572},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.5557523965835571},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5277234315872192},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.42621922492980957},{"id":"https://openalex.org/keywords/computational-topology","display_name":"Computational topology","score":0.4221016764640808},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3740368187427521},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23112070560455322},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22868916392326355},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.07342419028282166},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07259511947631836}],"concepts":[{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.7575152516365051},{"id":"https://openalex.org/C119062480","wikidata":"https://www.wikidata.org/wiki/Q83181","display_name":"Golgi apparatus","level":3,"score":0.6682932376861572},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.5557523965835571},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5277234315872192},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.42621922492980957},{"id":"https://openalex.org/C181576044","wikidata":"https://www.wikidata.org/wiki/Q4129926","display_name":"Computational topology","level":3,"score":0.4221016764640808},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3740368187427521},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23112070560455322},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22868916392326355},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.07342419028282166},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07259511947631836},{"id":"https://openalex.org/C158617107","wikidata":"https://www.wikidata.org/wiki/Q79927","display_name":"Endoplasmic reticulum","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006056","descriptor_name":"Golgi Apparatus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006056","descriptor_name":"Golgi Apparatus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006056","descriptor_name":"Golgi Apparatus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006056","descriptor_name":"Golgi Apparatus","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D006056","descriptor_name":"Golgi Apparatus","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D006056","descriptor_name":"Golgi Apparatus","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s12064-008-0030-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12064-008-0030-3","pdf_url":null,"source":{"id":"https://openalex.org/S12148721","display_name":"Theory in Biosciences","issn_l":"1431-7613","issn":["1431-7613","1611-7530"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in Biosciences","raw_type":"journal-article"},{"id":"pmid:18458977","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18458977","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory in biosciences = Theorie in den Biowissenschaften","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.657.3806","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.657.3806","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://hal.archives-ouvertes.fr/hal-00352003/document/","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W204235972","https://openalex.org/W1488868080","https://openalex.org/W1514353737","https://openalex.org/W1999982244","https://openalex.org/W2029922958","https://openalex.org/W2036509143","https://openalex.org/W2087274588","https://openalex.org/W2106190666","https://openalex.org/W2109223976","https://openalex.org/W2119510512","https://openalex.org/W2121149194","https://openalex.org/W2311387973","https://openalex.org/W2913004508"],"related_works":["https://openalex.org/W3216885170","https://openalex.org/W2607074349","https://openalex.org/W57995239","https://openalex.org/W2365767001","https://openalex.org/W1502851386","https://openalex.org/W1529961159","https://openalex.org/W2462189736","https://openalex.org/W2350650451","https://openalex.org/W2615750249","https://openalex.org/W2156206237"],"abstract_inverted_index":null,"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
