{"id":"https://openalex.org/W4321435323","doi":"https://doi.org/10.1007/s12021-023-09623-9","title":"Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System","display_name":"Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System","publication_year":2023,"publication_date":"2023-02-21","ids":{"openalex":"https://openalex.org/W4321435323","doi":"https://doi.org/10.1007/s12021-023-09623-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/36809643"},"language":"en","primary_location":{"id":"doi:10.1007/s12021-023-09623-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-023-09623-9","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075910802","display_name":"Johanna Perens","orcid":"https://orcid.org/0000-0002-0417-5647"},"institutions":[{"id":"https://openalex.org/I4210113742","display_name":"Gubra (Denmark)","ror":"https://ror.org/0244cxh34","country_code":"DK","type":"company","lineage":["https://openalex.org/I4210113742"]},{"id":"https://openalex.org/I2802567020","display_name":"Copenhagen University Hospital","ror":"https://ror.org/05bpbnx46","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2802567020"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Johanna Perens","raw_affiliation_strings":["Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Amager and Hvidovre, Copenhagen, Denmark","Gubra ApS, H\u00f8rsholm, Denmark","Section for Visual Computing, Department of Applied Mathematics and Computer Science, Technical University Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Amager and Hvidovre, Copenhagen, Denmark","institution_ids":["https://openalex.org/I2802567020"]},{"raw_affiliation_string":"Gubra ApS, H\u00f8rsholm, Denmark","institution_ids":["https://openalex.org/I4210113742"]},{"raw_affiliation_string":"Section for Visual Computing, Department of Applied Mathematics and Computer Science, Technical University Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103980615","display_name":"Casper Gravesen Salinas","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113742","display_name":"Gubra (Denmark)","ror":"https://ror.org/0244cxh34","country_code":"DK","type":"company","lineage":["https://openalex.org/I4210113742"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Casper Gravesen Salinas","raw_affiliation_strings":["Gubra ApS, H\u00f8rsholm, Denmark"],"affiliations":[{"raw_affiliation_string":"Gubra ApS, H\u00f8rsholm, Denmark","institution_ids":["https://openalex.org/I4210113742"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051508866","display_name":"Urmas Roostalu","orcid":"https://orcid.org/0000-0002-7849-2055"},"institutions":[{"id":"https://openalex.org/I4210113742","display_name":"Gubra (Denmark)","ror":"https://ror.org/0244cxh34","country_code":"DK","type":"company","lineage":["https://openalex.org/I4210113742"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Urmas Roostalu","raw_affiliation_strings":["Gubra ApS, H\u00f8rsholm, Denmark"],"affiliations":[{"raw_affiliation_string":"Gubra ApS, H\u00f8rsholm, Denmark","institution_ids":["https://openalex.org/I4210113742"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001538485","display_name":"Jacob Lercke Skytte","orcid":"https://orcid.org/0000-0003-0313-2124"},"institutions":[{"id":"https://openalex.org/I4210113742","display_name":"Gubra (Denmark)","ror":"https://ror.org/0244cxh34","country_code":"DK","type":"company","lineage":["https://openalex.org/I4210113742"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jacob Lercke Skytte","raw_affiliation_strings":["Gubra ApS, H\u00f8rsholm, Denmark"],"affiliations":[{"raw_affiliation_string":"Gubra ApS, H\u00f8rsholm, Denmark","institution_ids":["https://openalex.org/I4210113742"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084008668","display_name":"Carsten Gundlach","orcid":"https://orcid.org/0000-0002-2895-1882"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Carsten Gundlach","raw_affiliation_strings":["Neutrons and X-rays for Materials Physics, Department of Physics, Technical University Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Neutrons and X-rays for Materials Physics, Department of Physics, Technical University Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067103368","display_name":"Jacob Hecksher\u2010S\u00f8rensen","orcid":"https://orcid.org/0000-0002-5516-6177"},"institutions":[{"id":"https://openalex.org/I4210113742","display_name":"Gubra (Denmark)","ror":"https://ror.org/0244cxh34","country_code":"DK","type":"company","lineage":["https://openalex.org/I4210113742"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Jacob Hecksher-S\u00f8rensen","raw_affiliation_strings":["Gubra ApS, H\u00f8rsholm, Denmark. jhs@gubra.dk","Gubra ApS, H\u00f8rsholm, Denmark"],"affiliations":[{"raw_affiliation_string":"Gubra ApS, H\u00f8rsholm, Denmark. jhs@gubra.dk","institution_ids":["https://openalex.org/I4210113742"]},{"raw_affiliation_string":"Gubra ApS, H\u00f8rsholm, Denmark","institution_ids":["https://openalex.org/I4210113742"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031953389","display_name":"Anders Bjorholm Dahl","orcid":"https://orcid.org/0000-0002-0068-8170"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Anders Bjorholm Dahl","raw_affiliation_strings":["Section for Visual Computing, Department of Applied Mathematics and Computer Science, Technical University Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Section for Visual Computing, Department of Applied Mathematics and Computer Science, Technical University Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102857785","display_name":"Tim B. Dyrby","orcid":"https://orcid.org/0000-0003-3361-9734"},"institutions":[{"id":"https://openalex.org/I2802567020","display_name":"Copenhagen University Hospital","ror":"https://ror.org/05bpbnx46","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2802567020"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Tim B. Dyrby","raw_affiliation_strings":["Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Amager and Hvidovre, Copenhagen, Denmark","Section for Visual Computing, Department of Applied Mathematics and Computer Science, Technical University Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Amager and Hvidovre, Copenhagen, Denmark","institution_ids":["https://openalex.org/I2802567020"]},{"raw_affiliation_string":"Section for Visual Computing, Department of Applied Mathematics and Computer Science, Technical University Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5067103368"],"corresponding_institution_ids":["https://openalex.org/I4210113742"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":null,"fwci":6.9259,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.96445292,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"21","issue":"2","first_page":"269","last_page":"286"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/skull","display_name":"Skull","score":0.6840111613273621},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.6177621483802795},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5747998952865601},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.40810444951057434},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33854103088378906},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.2870367467403412},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2560851275920868},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.17260465025901794}],"concepts":[{"id":"https://openalex.org/C2779300802","wikidata":"https://www.wikidata.org/wiki/Q13147","display_name":"Skull","level":2,"score":0.6840111613273621},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.6177621483802795},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5747998952865601},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.40810444951057434},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33854103088378906},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.2870367467403412},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2560851275920868},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.17260465025901794}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012886","descriptor_name":"Skull","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D012886","descriptor_name":"Skull","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D012886","descriptor_name":"Skull","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s12021-023-09623-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-023-09623-9","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:36809643","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36809643","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G7996996613","display_name":null,"funder_award_id":"8053- 00121B","funder_id":"https://openalex.org/F4320313796","funder_display_name":"Innovationsfonden"}],"funders":[{"id":"https://openalex.org/F4320313796","display_name":"Innovationsfonden","ror":"https://ror.org/00daj4111"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":86,"referenced_works":["https://openalex.org/W608227570","https://openalex.org/W1498054934","https://openalex.org/W1606084096","https://openalex.org/W1977201853","https://openalex.org/W1991302353","https://openalex.org/W1995021884","https://openalex.org/W1997732141","https://openalex.org/W2000809964","https://openalex.org/W2012869021","https://openalex.org/W2013013539","https://openalex.org/W2014156217","https://openalex.org/W2014238143","https://openalex.org/W2015159529","https://openalex.org/W2017687738","https://openalex.org/W2022530159","https://openalex.org/W2026527241","https://openalex.org/W2028911404","https://openalex.org/W2036566245","https://openalex.org/W2051438014","https://openalex.org/W2064358322","https://openalex.org/W2068391384","https://openalex.org/W2068863154","https://openalex.org/W2070464891","https://openalex.org/W2076507262","https://openalex.org/W2078510393","https://openalex.org/W2087328731","https://openalex.org/W2097110160","https://openalex.org/W2115070053","https://openalex.org/W2120836547","https://openalex.org/W2127890285","https://openalex.org/W2131051578","https://openalex.org/W2133287637","https://openalex.org/W2135122142","https://openalex.org/W2254102990","https://openalex.org/W2350331664","https://openalex.org/W2408110716","https://openalex.org/W2508982726","https://openalex.org/W2573248138","https://openalex.org/W2573632622","https://openalex.org/W2606556535","https://openalex.org/W2756343653","https://openalex.org/W2769556951","https://openalex.org/W2771049431","https://openalex.org/W2777548161","https://openalex.org/W2790770291","https://openalex.org/W2796168157","https://openalex.org/W2809642647","https://openalex.org/W2809697129","https://openalex.org/W2889412653","https://openalex.org/W2891981915","https://openalex.org/W2896820751","https://openalex.org/W2900866106","https://openalex.org/W2908736514","https://openalex.org/W2910039853","https://openalex.org/W2919944573","https://openalex.org/W2921596675","https://openalex.org/W2937141551","https://openalex.org/W2943963786","https://openalex.org/W2962681100","https://openalex.org/W2970898057","https://openalex.org/W2985746287","https://openalex.org/W2985988766","https://openalex.org/W2991885443","https://openalex.org/W3003257820","https://openalex.org/W3006529112","https://openalex.org/W3012387312","https://openalex.org/W3013242926","https://openalex.org/W3021105102","https://openalex.org/W3022214373","https://openalex.org/W3025317003","https://openalex.org/W3035965352","https://openalex.org/W3088701716","https://openalex.org/W3092695059","https://openalex.org/W3099878876","https://openalex.org/W3103145119","https://openalex.org/W3115303948","https://openalex.org/W3126562850","https://openalex.org/W3157171302","https://openalex.org/W3160614797","https://openalex.org/W3173147806","https://openalex.org/W3180424009","https://openalex.org/W3195771546","https://openalex.org/W4200271479","https://openalex.org/W4224249782","https://openalex.org/W6629511769","https://openalex.org/W6679082059"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2324878645","https://openalex.org/W4408797289","https://openalex.org/W2803101231","https://openalex.org/W4284509"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":4}],"updated_date":"2026-01-20T17:24:06.736184","created_date":"2025-10-10T00:00:00"}
