{"id":"https://openalex.org/W3204859452","doi":"https://doi.org/10.1007/s12021-021-09530-x","title":"A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling","display_name":"A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling","publication_year":2021,"publication_date":"2021-10-02","ids":{"openalex":"https://openalex.org/W3204859452","doi":"https://doi.org/10.1007/s12021-021-09530-x","mag":"3204859452","pmid":"https://pubmed.ncbi.nlm.nih.gov/34601704"},"language":"en","primary_location":{"id":"doi:10.1007/s12021-021-09530-x","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-021-09530-x","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-021-09530-x.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s12021-021-09530-x.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072716330","display_name":"Aidan Sullivan","orcid":"https://orcid.org/0000-0001-6999-9906"},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. E. Sullivan","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":"https://orcid.org/0000-0001-6999-9906","affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061957757","display_name":"Susan Tappan","orcid":"https://orcid.org/0000-0001-5120-3770"},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. J. Tappan","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":"https://orcid.org/0000-0001-5120-3770","affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018138809","display_name":"Paul J. Angstman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. J. Angstman","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042254490","display_name":"Alfredo Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-1072-8631"},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Rodriguez","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085011545","display_name":"Gavin Thomas","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. C. Thomas","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031804148","display_name":"D. M. Hoppes","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. M. Hoppes","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108210158","display_name":"Muhammad\u2010Amri Abdul\u2010Karim","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. A. Abdul-Karim","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079128494","display_name":"Maci Heal","orcid":"https://orcid.org/0000-0001-5097-1030"},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. L. Heal","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA","MBF Bioscience, Williston, USA"],"raw_orcid":"https://orcid.org/0000-0001-5097-1030","affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066141902","display_name":"Jacob R. Glaser","orcid":"https://orcid.org/0000-0003-4463-207X"},"institutions":[{"id":"https://openalex.org/I4210130942","display_name":"MBF Bioscience (United States)","ror":"https://ror.org/02zynam48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130942"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jack R. Glaser","raw_affiliation_strings":["MBF Bioscience, Williston, VT, USA. jglaser@mbfbioscience.com","MBF Bioscience, Williston, USA"],"raw_orcid":"https://orcid.org/0000-0003-4463-207X","affiliations":[{"raw_affiliation_string":"MBF Bioscience, Williston, VT, USA. jglaser@mbfbioscience.com","institution_ids":["https://openalex.org/I4210130942"]},{"raw_affiliation_string":"MBF Bioscience, Williston, USA","institution_ids":["https://openalex.org/I4210130942"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5066141902"],"corresponding_institution_ids":["https://openalex.org/I4210130942"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":{"value":3190,"currency":"EUR","value_usd":4190},"fwci":1.9872,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.88328836,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"20","issue":"1","first_page":"221","last_page":"240"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9521999955177307,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9521999955177307,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10706","display_name":"Traumatic Brain Injury and Neurovascular Disturbances","score":0.9327999949455261,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.9045000076293945,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.663820743560791},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.4919006824493408},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34711945056915283},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34165459871292114},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32244306802749634},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.25925785303115845}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.663820743560791},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.4919006824493408},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34711945056915283},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34165459871292114},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32244306802749634},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25925785303115845}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1007/s12021-021-09530-x","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-021-09530-x","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-021-09530-x.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:34601704","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34601704","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8975944","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8975944","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Neuroinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s12021-021-09530-x","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-021-09530-x","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-021-09530-x.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1484282330","display_name":null,"funder_award_id":"OT3 OD025349","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6999035813","display_name":null,"funder_award_id":"1OT3OD025349-01","funder_id":"https://openalex.org/F4320337349","funder_display_name":"NIH Office of the Director"}],"funders":[{"id":"https://openalex.org/F4320330412","display_name":"Scheme for Promotion of Academic and Research Collaboration","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337349","display_name":"NIH Office of the Director","ror":"https://ror.org/00fj8a872"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3204859452.pdf","grobid_xml":"https://content.openalex.org/works/W3204859452.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1966930384","https://openalex.org/W1977669867","https://openalex.org/W1980185431","https://openalex.org/W1987300577","https://openalex.org/W1993379522","https://openalex.org/W2003493421","https://openalex.org/W2004430398","https://openalex.org/W2019633617","https://openalex.org/W2029845467","https://openalex.org/W2041695054","https://openalex.org/W2042967751","https://openalex.org/W2047108328","https://openalex.org/W2047951563","https://openalex.org/W2053767414","https://openalex.org/W2061186544","https://openalex.org/W2090043895","https://openalex.org/W2094150528","https://openalex.org/W2103010597","https://openalex.org/W2108321203","https://openalex.org/W2116228954","https://openalex.org/W2123495095","https://openalex.org/W2133406691","https://openalex.org/W2135203995","https://openalex.org/W2142679888","https://openalex.org/W2156012604","https://openalex.org/W2160308091","https://openalex.org/W2165137514","https://openalex.org/W2166510414","https://openalex.org/W2302501749","https://openalex.org/W2329486618","https://openalex.org/W2753527800","https://openalex.org/W2784109817","https://openalex.org/W2794163195","https://openalex.org/W2803042425","https://openalex.org/W2908833350","https://openalex.org/W2910779362","https://openalex.org/W2912464105","https://openalex.org/W3006355358","https://openalex.org/W3032208513","https://openalex.org/W3122085924","https://openalex.org/W4256388013","https://openalex.org/W6641506132","https://openalex.org/W6912890698","https://openalex.org/W6945804456"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"With":[0],"advances":[1],"in":[2,83,93,166],"microscopy":[3,84],"and":[4,13,52,68,85,112,141,149,160],"computer":[5],"science,":[6],"the":[7,38,61,86,94,100,108,119,157,171],"technique":[8],"of":[9,23,156,173,183],"digitally":[10],"reconstructing,":[11],"modeling,":[12],"quantifying":[14],"microscopic":[15],"anatomies":[16],"has":[17,28],"become":[18],"central":[19],"to":[20,30,78,99,139,169],"many":[21],"fields":[22],"biological":[24],"research.":[25],"MBF":[26,55],"Bioscience":[27],"chosen":[29],"openly":[31],"document":[32],"their":[33,162],"digital":[34],"reconstruction":[35],"file":[36,102,158],"format,":[37,50],"Neuromorphological":[39],"File":[40],"Specification,":[41],"available":[42],"at":[43],"www.mbfbioscience.com/filespecification":[44],"(Angstman":[45],"et":[46,126],"al.,":[47,127],"2020).":[48],"The":[49,64,133],"created":[51],"maintained":[53],"by":[54,60,90,107,118],"Bioscience,":[56],"is":[57],"broadly":[58],"utilized":[59],"neuroscience":[62],"community.":[63],"data":[65,115,144,176],"format's":[66],"structure":[67],"capabilities":[69],"have":[70],"evolved":[71],"since":[72],"its":[73],"inception,":[74],"with":[75,81],"modifications":[76,98],"made":[77],"keep":[79],"pace":[80],"advancements":[82],"scientific":[87],"questions":[88],"raised":[89],"worldwide":[91],"experts":[92],"field.":[95],"More":[96],"recent":[97],"neuromorphological":[101],"format":[103,159],"ensure":[104],"it":[105,137],"abides":[106],"Findable,":[109],"Accessible,":[110],"Interoperable,":[111],"Reusable":[113],"(FAIR)":[114],"principles":[116],"promoted":[117],"International":[120],"Neuroinformatics":[121],"Coordinating":[122],"Facility":[123],"(INCF;":[124],"Wilkinson":[125],"Scientific":[128],"Data,":[129],"3,":[130],"160018,,":[131],"2016).":[132],"incorporated":[134],"metadata":[135],"make":[136],"easy":[138],"identify":[140],"repurpose":[142],"these":[143,174],"types":[145],"for":[146,178],"downstream":[147],"applications":[148],"investigation.":[150],"This":[151],"publication":[152],"describes":[153],"key":[154],"elements":[155],"details":[161],"relevant":[163],"structural":[164],"advantages":[165],"an":[167],"effort":[168],"encourage":[170],"reuse":[172],"rich":[175],"files":[177],"alternative":[179],"analysis":[180],"or":[181],"reproduction":[182],"derived":[184],"conclusions.":[185]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
