{"id":"https://openalex.org/W3003587036","doi":"https://doi.org/10.1007/s12021-020-09453-z","title":"Automatic Brain Extraction for Rodent MRI Images","display_name":"Automatic Brain Extraction for Rodent MRI Images","publication_year":2020,"publication_date":"2020-01-27","ids":{"openalex":"https://openalex.org/W3003587036","doi":"https://doi.org/10.1007/s12021-020-09453-z","mag":"3003587036","pmid":"https://pubmed.ncbi.nlm.nih.gov/31989442"},"language":"en","primary_location":{"id":"doi:10.1007/s12021-020-09453-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-020-09453-z","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7343626","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069403527","display_name":"Yikang Liu","orcid":"https://orcid.org/0000-0003-1069-1215"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yikang Liu","raw_affiliation_strings":["Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025961178","display_name":"Hayreddin Said \u00dcnsal","orcid":"https://orcid.org/0009-0000-6906-2144"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hayreddin Said Unsal","raw_affiliation_strings":["Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693771","display_name":"Yi Tao","orcid":"https://orcid.org/0000-0002-1882-8098"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Tao","raw_affiliation_strings":["Department of Mathematics, The Pennsylvania State University, University Park, PA, 16802, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, The Pennsylvania State University, University Park, PA, 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017318365","display_name":"Nanyin Zhang","orcid":"https://orcid.org/0000-0002-5824-9058"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I4210147799","display_name":"Millennium Engineering and Integration (United States)","ror":"https://ror.org/05qmdfk04","country_code":"US","type":"company","lineage":["https://openalex.org/I4210147799"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nanyin Zhang","raw_affiliation_strings":["Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA. nuz2@psu.edu","The Huck Institutes of the Life Sciences, The Pennsylvania State University, W-341 Millennium Science Complex, University Park, PA, 16802, USA. nuz2@psu.edu","The Huck Institutes of the Life Sciences, The Pennsylvania State University, W-341 Millennium Science Complex, University Park, PA, 16802, USA"],"raw_orcid":"https://orcid.org/0000-0002-5824-9058","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA. nuz2@psu.edu","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"The Huck Institutes of the Life Sciences, The Pennsylvania State University, W-341 Millennium Science Complex, University Park, PA, 16802, USA. nuz2@psu.edu","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"The Huck Institutes of the Life Sciences, The Pennsylvania State University, W-341 Millennium Science Complex, University Park, PA, 16802, USA","institution_ids":["https://openalex.org/I130769515","https://openalex.org/I4210147799"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5017318365"],"corresponding_institution_ids":["https://openalex.org/I130769515","https://openalex.org/I4210147799"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":null,"fwci":2.6771,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.92020637,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"18","issue":"3","first_page":"395","last_page":"406"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.7223443984985352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6716794371604919},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6643557548522949},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5622783899307251},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5596820712089539},{"id":"https://openalex.org/keywords/rodent","display_name":"Rodent","score":0.47014692425727844},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3216046094894409},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.2268896996974945},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15655869245529175}],"concepts":[{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.7223443984985352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6716794371604919},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6643557548522949},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5622783899307251},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5596820712089539},{"id":"https://openalex.org/C2778914748","wikidata":"https://www.wikidata.org/wiki/Q10850","display_name":"Rodent","level":2,"score":0.47014692425727844},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3216046094894409},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.2268896996974945},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15655869245529175},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s12021-020-09453-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-020-09453-z","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:31989442","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31989442","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7343626","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7343626","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Neuroinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7343626","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7343626","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Neuroinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4768427890","display_name":null,"funder_award_id":"R01NS085200","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G5593010167","display_name":null,"funder_award_id":"RF1MH114224","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G7147346338","display_name":null,"funder_award_id":"R01MH098003","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W244352524","https://openalex.org/W749435374","https://openalex.org/W1490926540","https://openalex.org/W1594041518","https://openalex.org/W1966319617","https://openalex.org/W1983208069","https://openalex.org/W1983482668","https://openalex.org/W1986835085","https://openalex.org/W1994119018","https://openalex.org/W1996645992","https://openalex.org/W2004691878","https://openalex.org/W2015513982","https://openalex.org/W2021787435","https://openalex.org/W2024047266","https://openalex.org/W2026527241","https://openalex.org/W2052235656","https://openalex.org/W2064358322","https://openalex.org/W2066180616","https://openalex.org/W2066941820","https://openalex.org/W2068863154","https://openalex.org/W2071881327","https://openalex.org/W2072307287","https://openalex.org/W2093135169","https://openalex.org/W2104733629","https://openalex.org/W2111876935","https://openalex.org/W2116044718","https://openalex.org/W2117140276","https://openalex.org/W2118853360","https://openalex.org/W2118987707","https://openalex.org/W2119848633","https://openalex.org/W2124404372","https://openalex.org/W2130424909","https://openalex.org/W2131104747","https://openalex.org/W2145661921","https://openalex.org/W2151050383","https://openalex.org/W2156806123","https://openalex.org/W2157848968","https://openalex.org/W2166894022","https://openalex.org/W2168567852","https://openalex.org/W2281288283","https://openalex.org/W2284198383","https://openalex.org/W2613099952","https://openalex.org/W2619368912","https://openalex.org/W2731852241","https://openalex.org/W2805619515","https://openalex.org/W2808968483","https://openalex.org/W2831531038","https://openalex.org/W2902683282","https://openalex.org/W2951583631","https://openalex.org/W2951908947","https://openalex.org/W2988309775","https://openalex.org/W3037722287","https://openalex.org/W6677322329"],"related_works":["https://openalex.org/W2350255632","https://openalex.org/W2347882334","https://openalex.org/W2413334937","https://openalex.org/W2793514199","https://openalex.org/W2348643805","https://openalex.org/W2327340211","https://openalex.org/W2390542165","https://openalex.org/W2027542625","https://openalex.org/W1967924538","https://openalex.org/W4292199793"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
