{"id":"https://openalex.org/W2804093452","doi":"https://doi.org/10.1007/s12021-018-9410-0","title":"Small Animal Multivariate Brain Analysis (SAMBA) \u2013 a High Throughput Pipeline with a Validation Framework","display_name":"Small Animal Multivariate Brain Analysis (SAMBA) \u2013 a High Throughput Pipeline with a Validation Framework","publication_year":2018,"publication_date":"2018-12-19","ids":{"openalex":"https://openalex.org/W2804093452","doi":"https://doi.org/10.1007/s12021-018-9410-0","mag":"2804093452","pmid":"https://pubmed.ncbi.nlm.nih.gov/30565026"},"language":"en","primary_location":{"id":"doi:10.1007/s12021-018-9410-0","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-018-9410-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-018-9410-0.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s12021-018-9410-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065753515","display_name":"Robert J. Anderson","orcid":"https://orcid.org/0000-0002-3021-9797"},"institutions":[{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert J. Anderson","raw_affiliation_strings":["Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210126298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101532176","display_name":"James J. Cook","orcid":"https://orcid.org/0000-0001-9847-8683"},"institutions":[{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James J. Cook","raw_affiliation_strings":["Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210126298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001031173","display_name":"Natalie A Delpratt","orcid":"https://orcid.org/0009-0003-9186-1171"},"institutions":[{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalie Delpratt","raw_affiliation_strings":["Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA","Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210126298"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210153043","https://openalex.org/I4210126298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078582369","display_name":"John Nouls","orcid":"https://orcid.org/0000-0003-2504-7625"},"institutions":[{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John C. Nouls","raw_affiliation_strings":["Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210126298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004432130","display_name":"Bin Gu","orcid":"https://orcid.org/0000-0002-6846-5563"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bin Gu","raw_affiliation_strings":["Department of Cell Biology and Physiology, University of North Carolina, Chapel Hill, NC, 27599, USA","Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology and Physiology, University of North Carolina, Chapel Hill, NC, 27599, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210153043","https://openalex.org/I4210126298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070835383","display_name":"James O McNamara","orcid":"https://orcid.org/0000-0003-4091-618X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James O. McNamara","raw_affiliation_strings":["Department of Neurobiology, Duke University Medical Center, Durham, NC, 27710, USA","Department of Neurology, Duke University Medical Center, Durham, NC, 27710, USA","Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I170897317","https://openalex.org/I4210153043","https://openalex.org/I4210126298"]},{"raw_affiliation_string":"Department of Neurology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210153043","https://openalex.org/I4210126298"]},{"raw_affiliation_string":"Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210153043","https://openalex.org/I4210126298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016551394","display_name":"Brian Avants","orcid":"https://orcid.org/0000-0002-4212-3362"},"institutions":[{"id":"https://openalex.org/I1297540436","display_name":"Biogen (United States)","ror":"https://ror.org/02jqkb192","country_code":"US","type":"company","lineage":["https://openalex.org/I1297540436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian B. Avants","raw_affiliation_strings":["Biogen, Cambridge, MA, 02142, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biogen, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I1297540436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087959553","display_name":"G. Allan Johnson","orcid":"https://orcid.org/0000-0002-7606-5447"},"institutions":[{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Allan Johnson","raw_affiliation_strings":["Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA","Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210126298"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210153043","https://openalex.org/I4210126298"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051190025","display_name":"Alexandra Badea","orcid":"https://orcid.org/0000-0001-6621-4560"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandra Badea","raw_affiliation_strings":["Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA. alexandra.badea@duke.edu","Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA. alexandra.badea@duke.edu","Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA"],"raw_orcid":"https://orcid.org/0000-0001-6621-4560","affiliations":[{"raw_affiliation_string":"Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC, 27710, USA. alexandra.badea@duke.edu","institution_ids":["https://openalex.org/I4210126298","https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA. alexandra.badea@duke.edu","institution_ids":["https://openalex.org/I4210126298","https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University Medical Center, 3302, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210153043","https://openalex.org/I4210126298"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5065753515"],"corresponding_institution_ids":["https://openalex.org/I4210126298"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":{"value":3190,"currency":"EUR","value_usd":4190},"fwci":3.436,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.92868524,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"17","issue":"3","first_page":"451","last_page":"472"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7486129999160767},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6000164747238159},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.5556452870368958},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.5533525347709656},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4590323269367218},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.45568206906318665},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.4307264983654022},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4267893135547638},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.1283906102180481},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10360032320022583},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09107246994972229},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09106898307800293}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7486129999160767},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6000164747238159},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.5556452870368958},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.5533525347709656},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4590323269367218},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.45568206906318665},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.4307264983654022},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4267893135547638},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.1283906102180481},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10360032320022583},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09107246994972229},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09106898307800293},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s12021-018-9410-0","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-018-9410-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-018-9410-0.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:30565026","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30565026","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6584586","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6584586","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Neuroinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s12021-018-9410-0","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-018-9410-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-018-9410-0.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1828520617","display_name":null,"funder_award_id":"K01 AG041211","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G1872209276","display_name":null,"funder_award_id":"S10OD010683","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2067693882","display_name":null,"funder_award_id":"P41 EB015897","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"},{"id":"https://openalex.org/G2917916329","display_name":null,"funder_award_id":"K01 AG041211","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4036709572","display_name":null,"funder_award_id":"P41EB015897","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5382135096","display_name":null,"funder_award_id":"P41 EB015897","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6109000415","display_name":null,"funder_award_id":"K01AG041211","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7627866099","display_name":null,"funder_award_id":"AG041211","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8940390987","display_name":null,"funder_award_id":"EB015897","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2804093452.pdf"},"referenced_works_count":95,"referenced_works":["https://openalex.org/W771622973","https://openalex.org/W1596936080","https://openalex.org/W1605974423","https://openalex.org/W1723579215","https://openalex.org/W1784695092","https://openalex.org/W1828874644","https://openalex.org/W1862407261","https://openalex.org/W1963603721","https://openalex.org/W1964172570","https://openalex.org/W1967251218","https://openalex.org/W1970928383","https://openalex.org/W1973127790","https://openalex.org/W1974897177","https://openalex.org/W1975111110","https://openalex.org/W1983953022","https://openalex.org/W1986485707","https://openalex.org/W1987939579","https://openalex.org/W1988193785","https://openalex.org/W1991897454","https://openalex.org/W1993175280","https://openalex.org/W1997004988","https://openalex.org/W1997732141","https://openalex.org/W2001937826","https://openalex.org/W2004017387","https://openalex.org/W2005768359","https://openalex.org/W2006096283","https://openalex.org/W2006907540","https://openalex.org/W2007149032","https://openalex.org/W2014148850","https://openalex.org/W2015852090","https://openalex.org/W2016423032","https://openalex.org/W2017806092","https://openalex.org/W2019836674","https://openalex.org/W2022842031","https://openalex.org/W2024138835","https://openalex.org/W2025367651","https://openalex.org/W2025445428","https://openalex.org/W2026527241","https://openalex.org/W2035093859","https://openalex.org/W2039605938","https://openalex.org/W2042662378","https://openalex.org/W2056843713","https://openalex.org/W2059923048","https://openalex.org/W2059998004","https://openalex.org/W2066009595","https://openalex.org/W2067171432","https://openalex.org/W2068105619","https://openalex.org/W2068914179","https://openalex.org/W2078385314","https://openalex.org/W2081115605","https://openalex.org/W2093271426","https://openalex.org/W2093471907","https://openalex.org/W2102099319","https://openalex.org/W2102521965","https://openalex.org/W2103927071","https://openalex.org/W2116649573","https://openalex.org/W2119124441","https://openalex.org/W2119848633","https://openalex.org/W2127610689","https://openalex.org/W2134305330","https://openalex.org/W2136145485","https://openalex.org/W2137072914","https://openalex.org/W2139182179","https://openalex.org/W2146656328","https://openalex.org/W2150321679","https://openalex.org/W2150936467","https://openalex.org/W2154276106","https://openalex.org/W2154996145","https://openalex.org/W2157380596","https://openalex.org/W2158649156","https://openalex.org/W2163274894","https://openalex.org/W2169239134","https://openalex.org/W2171051269","https://openalex.org/W2230055840","https://openalex.org/W2243097306","https://openalex.org/W2279935734","https://openalex.org/W2331242735","https://openalex.org/W2415803807","https://openalex.org/W2507413010","https://openalex.org/W2557605207","https://openalex.org/W2582743722","https://openalex.org/W2943963786","https://openalex.org/W2949255397","https://openalex.org/W2950532129","https://openalex.org/W2951103577","https://openalex.org/W2977883299","https://openalex.org/W2986720939","https://openalex.org/W2998980038","https://openalex.org/W3169336688","https://openalex.org/W3211573487","https://openalex.org/W4285719527","https://openalex.org/W6636471014","https://openalex.org/W6637868160","https://openalex.org/W6685694715","https://openalex.org/W6803356969"],"related_works":["https://openalex.org/W4254851101","https://openalex.org/W3171007296","https://openalex.org/W22115721","https://openalex.org/W2211931904","https://openalex.org/W2321234655","https://openalex.org/W2065444835","https://openalex.org/W4394550905","https://openalex.org/W2470062578","https://openalex.org/W2952773340","https://openalex.org/W2981861370"],"abstract_inverted_index":{"While":[0,30],"many":[1,64],"neuroscience":[2],"questions":[3],"aim":[4],"to":[5,119,174],"understand":[6],"the":[7,27,45,63,133,176,212,221,228,244],"human":[8,28,206],"brain,":[9],"much":[10],"current":[11],"knowledge":[12],"has":[13],"been":[14],"gained":[15],"using":[16],"animal":[17,91,198],"models,":[18,142],"which":[19],"replicate":[20],"genetic,":[21],"structural,":[22],"and":[23,49,62,86,135,152,165,218,246],"connectivity":[24],"aspects":[25],"of":[26,34,44,58,88,137,149,188,214,223,237,248],"brain.":[29],"voxel-based":[31],"analysis":[32],"(VBA)":[33],"preclinical":[35,78,138,240],"magnetic":[36],"resonance":[37],"images":[38],"is":[39,52],"widely-used,":[40],"a":[41,97,105,145,181,185,202,224],"thorough":[42],"examination":[43],"statistical":[46],"robustness,":[47],"stability,":[48],"error":[50],"rates":[51],"hindered":[53],"by":[54],"high":[55,100],"computational":[56,113],"demands":[57],"processing":[59],"large":[60,116],"arrays,":[61],"parameters":[65,179],"involved":[66],"therein.":[67],"Thus,":[68],"workflows":[69],"are":[70],"often":[71],"based":[72],"on":[73],"intuition":[74],"or":[75],"experience,":[76],"while":[77],"validation":[79,146],"studies":[80],"remain":[81],"scarce.":[82],"To":[83,131],"increase":[84],"throughput":[85,101],"reproducibility":[87],"quantitative":[89],"small":[90,197],"brain":[92],"studies,":[93],"we":[94,143],"have":[95,170],"developed":[96],"publicly":[98],"shared,":[99],"VBA":[102,139,161,177,182,215,238],"pipeline":[103],"in":[104,122,140,180,201,239],"high-performance":[106],"computing":[107],"environment,":[108],"called":[109],"SAMBA.":[110],"The":[111,230],"increased":[112],"efficiency":[114],"allowed":[115],"multidimensional":[117],"arrays":[118],"be":[120,220],"processed":[121],"1-3":[123],"days-a":[124],"task":[125],"that":[126,159,210],"previously":[127],"took":[128],"~1":[129],"month.":[130],"quantify":[132],"variability":[134],"reliability":[136],"rodent":[141],"propose":[144],"framework":[147,173,232],"consisting":[148],"morphological":[150],"phantoms,":[151],"four":[153],"metrics.":[154],"This":[155],"addresses":[156],"several":[157],"sources":[158],"impact":[160],"results,":[162],"including":[163],"registration":[164],"template":[166],"construction":[167],"strategies.":[168],"We":[169,190,208],"used":[171],"this":[172],"inform":[175],"workflow":[178],"study":[183],"for":[184],"mouse":[186],"model":[187],"epilepsy.":[189],"also":[191],"present":[192],"initial":[193],"efforts":[194],"towards":[195],"standardizing":[196],"neuroimaging":[199],"data":[200],"similar":[203],"fashion":[204],"with":[205],"neuroimaging.":[207],"conclude":[209],"verifying":[211],"accuracy":[213],"merits":[216],"attention,":[217],"should":[219],"focus":[222],"broader":[225],"effort":[226],"within":[227],"community.":[229],"proposed":[231],"promotes":[233],"consistent":[234],"quality":[235],"assurance":[236],"neuroimaging,":[241],"thus":[242],"facilitating":[243],"creation":[245],"communication":[247],"robust":[249],"results.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":6}],"updated_date":"2026-01-15T23:16:33.117629","created_date":"2025-10-10T00:00:00"}
