{"id":"https://openalex.org/W2464755955","doi":"https://doi.org/10.1007/s12021-016-9308-7","title":"N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions","display_name":"N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions","publication_year":2016,"publication_date":"2016-07-13","ids":{"openalex":"https://openalex.org/W2464755955","doi":"https://doi.org/10.1007/s12021-016-9308-7","mag":"2464755955","pmid":"https://pubmed.ncbi.nlm.nih.gov/27412029"},"language":"en","primary_location":{"id":"doi:10.1007/s12021-016-9308-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-016-9308-7","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086793636","display_name":"Eduardo Conde\u2010Sousa","orcid":null},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Eduardo Conde-Sousa","raw_affiliation_strings":["CBMA - Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal","CIBIO-InBIO - Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, Universidade do Porto, Vair\u00e3o, Portugal","CMUP - Centro de Matem\u00e1tica, Universidade do Porto, Porto, Portugal","CBMA \u2013 Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal"],"affiliations":[{"raw_affiliation_string":"CBMA - Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal","institution_ids":["https://openalex.org/I99682543"]},{"raw_affiliation_string":"CIBIO-InBIO - Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, Universidade do Porto, Vair\u00e3o, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"CMUP - Centro de Matem\u00e1tica, Universidade do Porto, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"CBMA \u2013 Centre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083774590","display_name":"P\u00e9ter Sz\u0171cs","orcid":"https://orcid.org/0000-0003-4635-6427"},"institutions":[{"id":"https://openalex.org/I132735039","display_name":"University of Debrecen","ror":"https://ror.org/02xf66n48","country_code":"HU","type":"education","lineage":["https://openalex.org/I132735039"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Peter Sz\u00fccs","raw_affiliation_strings":["Department of Physiology, University of Debrecen, Debrecen, Hungary","MTA-DE-NAP B-Pain Control Research Group, Debrecen, Hungary"],"affiliations":[{"raw_affiliation_string":"Department of Physiology, University of Debrecen, Debrecen, Hungary","institution_ids":["https://openalex.org/I132735039"]},{"raw_affiliation_string":"MTA-DE-NAP B-Pain Control Research Group, Debrecen, Hungary","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hanchuan Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanchuan Peng","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003513755","display_name":"Paulo Aguiar","orcid":"https://orcid.org/0000-0003-4164-5713"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I4210158732","display_name":"i3S - Instituto de Investiga\u00e7\u00e3o e Inova\u00e7\u00e3o em Sa\u00fade, Universidade do Porto","ror":"https://ror.org/04wjk1035","country_code":"PT","type":"facility","lineage":["https://openalex.org/I182534213","https://openalex.org/I4210158732"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Paulo Aguiar","raw_affiliation_strings":["CMUP - Centro de Matem\u00e1tica, Universidade do Porto, Porto, Portugal. pauloaguiar@ineb.up.pt","INEB - Instituto de Engenharia Biom\u00e9dica, Universidade do Porto, Porto, Portugal. pauloaguiar@ineb.up.pt","i3S - Instituto de Investiga\u00e7\u00e3o e Inova\u00e7\u00e3o em Sa\u00fade, Universidade do Porto, Porto, Portugal. pauloaguiar@ineb.up.pt","CMUP \u2013 Centro de Matem\u00e1tica, Universidade do Porto, Porto, Portugal"],"affiliations":[{"raw_affiliation_string":"CMUP - Centro de Matem\u00e1tica, Universidade do Porto, Porto, Portugal. pauloaguiar@ineb.up.pt","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"INEB - Instituto de Engenharia Biom\u00e9dica, Universidade do Porto, Porto, Portugal. pauloaguiar@ineb.up.pt","institution_ids":["https://openalex.org/I182534213","https://openalex.org/I4210158732"]},{"raw_affiliation_string":"i3S - Instituto de Investiga\u00e7\u00e3o e Inova\u00e7\u00e3o em Sa\u00fade, Universidade do Porto, Porto, Portugal. pauloaguiar@ineb.up.pt","institution_ids":["https://openalex.org/I4210158732"]},{"raw_affiliation_string":"CMUP \u2013 Centro de Matem\u00e1tica, Universidade do Porto, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086793636"],"corresponding_institution_ids":["https://openalex.org/I182534213","https://openalex.org/I99682543"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":null,"fwci":0.5033,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.8467433,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"15","issue":"1","first_page":"5","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9639999866485596,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7413987517356873},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6981200575828552},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.6815185546875},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.6746682524681091},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5554317235946655},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.503701388835907},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4772341549396515},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46252283453941345},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4331715703010559},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38088715076446533}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7413987517356873},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6981200575828552},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.6815185546875},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.6746682524681091},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5554317235946655},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.503701388835907},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4772341549396515},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46252283453941345},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4331715703010559},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38088715076446533},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017208","descriptor_name":"Rats, Wistar","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017208","descriptor_name":"Rats, Wistar","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017208","descriptor_name":"Rats, Wistar","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066148","descriptor_name":"Spinal Cord Dorsal Horn","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D066148","descriptor_name":"Spinal Cord Dorsal Horn","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D066148","descriptor_name":"Spinal Cord Dorsal Horn","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s12021-016-9308-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-016-9308-7","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:27412029","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27412029","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null},{"id":"pmh:oai:dea.lib.unideb.hu:2437/256895","is_oa":false,"landing_page_url":"http://hdl.handle.net/2437/256895","pdf_url":null,"source":{"id":"https://openalex.org/S4306402089","display_name":"University of Debrecen Electronic Archive (University of Debrecen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132735039","host_organization_name":"University of Debrecen","host_organization_lineage":["https://openalex.org/I132735039"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2490314768","display_name":null,"funder_award_id":"PEst-C/MAT/UI0144/2011","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G589876745","display_name":null,"funder_award_id":"SFRH/BD/65633/2009","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1508135620","https://openalex.org/W1517714302","https://openalex.org/W1545085919","https://openalex.org/W1796418800","https://openalex.org/W1966203215","https://openalex.org/W1982714134","https://openalex.org/W1989396876","https://openalex.org/W2004430398","https://openalex.org/W2014252132","https://openalex.org/W2018227909","https://openalex.org/W2022891354","https://openalex.org/W2036901575","https://openalex.org/W2038152105","https://openalex.org/W2047951563","https://openalex.org/W2059715474","https://openalex.org/W2061186544","https://openalex.org/W2064886678","https://openalex.org/W2074633779","https://openalex.org/W2095256649","https://openalex.org/W2103296959","https://openalex.org/W2110918734","https://openalex.org/W2117120818","https://openalex.org/W2123495095","https://openalex.org/W2148643591","https://openalex.org/W2155063410","https://openalex.org/W2160308091","https://openalex.org/W2278712272","https://openalex.org/W2496536246","https://openalex.org/W2502609228","https://openalex.org/W4246826466","https://openalex.org/W4256338178","https://openalex.org/W6603510825"],"related_works":["https://openalex.org/W2888673113","https://openalex.org/W4295532600","https://openalex.org/W2056065966","https://openalex.org/W2062641654","https://openalex.org/W2063823869","https://openalex.org/W2352602608","https://openalex.org/W2212288070","https://openalex.org/W3023262859","https://openalex.org/W3213987435","https://openalex.org/W1869907491"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}
