{"id":"https://openalex.org/W1998874218","doi":"https://doi.org/10.1007/s12021-014-9253-2","title":"Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models","display_name":"Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models","publication_year":2015,"publication_date":"2015-01-28","ids":{"openalex":"https://openalex.org/W1998874218","doi":"https://doi.org/10.1007/s12021-014-9253-2","mag":"1998874218","pmid":"https://pubmed.ncbi.nlm.nih.gov/25631538"},"language":"en","primary_location":{"id":"doi:10.1007/s12021-014-9253-2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-014-9253-2","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025131969","display_name":"Alberto Santamar\u00eda-Pang","orcid":"https://orcid.org/0000-0003-4012-8394"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alberto Santamar\u00eda-Pang","raw_affiliation_strings":["Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, TX, 77204, USA","Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082073421","display_name":"Paul Hern\u00e1ndez\u2010Herrera","orcid":"https://orcid.org/0000-0002-2206-3489"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Hernandez-Herrera","raw_affiliation_strings":["Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, TX, 77204, USA","Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083103442","display_name":"Manos Papadakis","orcid":"https://orcid.org/0000-0002-9758-7076"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manos Papadakis","raw_affiliation_strings":["Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, TX, 77204, USA","Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Computational Biomedicine Lab, Department of Computer Science, University of Houston, Houston, USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102988075","display_name":"Peter Saggau","orcid":"https://orcid.org/0000-0002-6335-7475"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Saggau","raw_affiliation_strings":["Department of Mathematics, University of Houston, Houston, TX, 77204, USA","Department of Mathematics, University of Houston, Houston, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Houston, Houston, TX, 77204, USA","institution_ids":["https://openalex.org/I44461941"]},{"raw_affiliation_string":"Department of Mathematics, University of Houston, Houston, USA#TAB#","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031773367","display_name":"Ioannis A. Kakadiaris","orcid":"https://orcid.org/0000-0002-0591-1079"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ioannis A. Kakadiaris","raw_affiliation_strings":["Department of Neuroscience, Baylor College of Medicine, Houston, TX, 77030, USA","Department of Neuroscience, Baylor College of Medicine, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Baylor College of Medicine, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I181547552"]},{"raw_affiliation_string":"Department of Neuroscience, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5025131969"],"corresponding_institution_ids":["https://openalex.org/I44461941"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":null,"fwci":10.362,"has_fulltext":false,"cited_by_count":57,"citation_normalized_percentile":{"value":0.97828871,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"13","issue":"3","first_page":"297","last_page":"320"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/skeletonization","display_name":"Skeletonization","score":0.8148131370544434},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6520615816116333},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6275179982185364},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5434219837188721},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.49294161796569824},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.473125159740448},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.45971158146858215},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.4243118166923523},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.419086217880249},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4153462052345276},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.15197184681892395},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.13238775730133057},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09343814849853516}],"concepts":[{"id":"https://openalex.org/C23951316","wikidata":"https://www.wikidata.org/wiki/Q1984140","display_name":"Skeletonization","level":2,"score":0.8148131370544434},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6520615816116333},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6275179982185364},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5434219837188721},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.49294161796569824},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.473125159740448},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.45971158146858215},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.4243118166923523},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.419086217880249},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4153462052345276},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.15197184681892395},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.13238775730133057},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09343814849853516},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003712","descriptor_name":"Dendrites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003712","descriptor_name":"Dendrites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003712","descriptor_name":"Dendrites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056547","descriptor_name":"CA1 Region, Hippocampal","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D056547","descriptor_name":"CA1 Region, Hippocampal","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D056547","descriptor_name":"CA1 Region, Hippocampal","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s12021-014-9253-2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s12021-014-9253-2","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:25631538","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25631538","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309549","display_name":"University of Houston","ror":"https://ror.org/040vwpm13"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W1238092070","https://openalex.org/W1482214570","https://openalex.org/W1515923768","https://openalex.org/W1530023394","https://openalex.org/W1549656520","https://openalex.org/W1555173571","https://openalex.org/W1559344731","https://openalex.org/W1562009907","https://openalex.org/W1601798363","https://openalex.org/W1962314142","https://openalex.org/W1965210407","https://openalex.org/W1973195069","https://openalex.org/W1979845944","https://openalex.org/W1981329364","https://openalex.org/W1985233543","https://openalex.org/W1992621211","https://openalex.org/W1996342882","https://openalex.org/W2001658278","https://openalex.org/W2013285325","https://openalex.org/W2014202210","https://openalex.org/W2022937801","https://openalex.org/W2027029173","https://openalex.org/W2030179996","https://openalex.org/W2036901575","https://openalex.org/W2064397224","https://openalex.org/W2092859932","https://openalex.org/W2093230218","https://openalex.org/W2096320880","https://openalex.org/W2097062636","https://openalex.org/W2098979973","https://openalex.org/W2111983243","https://openalex.org/W2113682088","https://openalex.org/W2116906919","https://openalex.org/W2119821739","https://openalex.org/W2122325405","https://openalex.org/W2124257654","https://openalex.org/W2129534965","https://openalex.org/W2131683071","https://openalex.org/W2132054471","https://openalex.org/W2139936493","https://openalex.org/W2142958591","https://openalex.org/W2145150744","https://openalex.org/W2145802328","https://openalex.org/W2150134853","https://openalex.org/W2156012604","https://openalex.org/W2156114286","https://openalex.org/W2156909104","https://openalex.org/W2157408013","https://openalex.org/W2157700389","https://openalex.org/W2161926992","https://openalex.org/W2169528473","https://openalex.org/W2171220448","https://openalex.org/W2279313673","https://openalex.org/W2341512478","https://openalex.org/W2537050922","https://openalex.org/W2798588639","https://openalex.org/W3044583775","https://openalex.org/W4211011818","https://openalex.org/W6750258011","https://openalex.org/W6821113053","https://openalex.org/W7074132618"],"related_works":["https://openalex.org/W2132416234","https://openalex.org/W2118553688","https://openalex.org/W2092783742","https://openalex.org/W2292955152","https://openalex.org/W2376130299","https://openalex.org/W4220907282","https://openalex.org/W1549296799","https://openalex.org/W41790368","https://openalex.org/W2623093699","https://openalex.org/W1573128140"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
