{"id":"https://openalex.org/W1965383030","doi":"https://doi.org/10.1007/s12021-011-9138-6","title":"Common Atlas Format and 3D Brain Atlas Reconstructor: Infrastructure for Constructing 3D Brain Atlases","display_name":"Common Atlas Format and 3D Brain Atlas Reconstructor: Infrastructure for Constructing 3D Brain Atlases","publication_year":2012,"publication_date":"2012-01-06","ids":{"openalex":"https://openalex.org/W1965383030","doi":"https://doi.org/10.1007/s12021-011-9138-6","mag":"1965383030","pmid":"https://pubmed.ncbi.nlm.nih.gov/22227717"},"language":"en","primary_location":{"id":"doi:10.1007/s12021-011-9138-6","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-011-9138-6","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-011-9138-6.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s12021-011-9138-6.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060193385","display_name":"Piotr Majka","orcid":"https://orcid.org/0000-0002-9055-8686"},"institutions":[{"id":"https://openalex.org/I16778253","display_name":"Instytut Biologii Do\u015bwiadczalnej im. Marcelego Nenckiego","ror":"https://ror.org/04waf7p94","country_code":"PL","type":"facility","lineage":["https://openalex.org/I16778253","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Piotr Majka","raw_affiliation_strings":["Department of Neurophysiology, Nencki Institute of Experimental Biology, 3 Pasteur Street, 02-093, Warsaw, Poland. p.majka@nencki.gov.pl","Nencki Institute of Experimental Biology"],"affiliations":[{"raw_affiliation_string":"Department of Neurophysiology, Nencki Institute of Experimental Biology, 3 Pasteur Street, 02-093, Warsaw, Poland. p.majka@nencki.gov.pl","institution_ids":["https://openalex.org/I16778253"]},{"raw_affiliation_string":"Nencki Institute of Experimental Biology","institution_ids":["https://openalex.org/I16778253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019083537","display_name":"Ewa Kublik","orcid":"https://orcid.org/0000-0001-6806-9707"},"institutions":[{"id":"https://openalex.org/I16778253","display_name":"Instytut Biologii Do\u015bwiadczalnej im. Marcelego Nenckiego","ror":"https://ror.org/04waf7p94","country_code":"PL","type":"facility","lineage":["https://openalex.org/I16778253","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Ewa Kublik","raw_affiliation_strings":["Department of Neurophysiology, Nencki Institute of Experimental Biology, 3 Pasteur Street, 02-093, Warsaw, Poland","Nencki Institute of Experimental Biology"],"affiliations":[{"raw_affiliation_string":"Department of Neurophysiology, Nencki Institute of Experimental Biology, 3 Pasteur Street, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I16778253"]},{"raw_affiliation_string":"Nencki Institute of Experimental Biology","institution_ids":["https://openalex.org/I16778253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053405192","display_name":"Grzegorz Furga","orcid":null},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Grzegorz Furga","raw_affiliation_strings":["Department of Mathematics, Mechanics and Computer Science, University of Warsaw, Warsaw, Poland","University of Warsaw"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Mechanics and Computer Science, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"University of Warsaw","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073099395","display_name":"Daniel K. W\u00f3jcik","orcid":"https://orcid.org/0000-0003-0812-9872"},"institutions":[{"id":"https://openalex.org/I16778253","display_name":"Instytut Biologii Do\u015bwiadczalnej im. Marcelego Nenckiego","ror":"https://ror.org/04waf7p94","country_code":"PL","type":"facility","lineage":["https://openalex.org/I16778253","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Daniel Krzysztof W\u00f3jcik","raw_affiliation_strings":["Department of Neurophysiology, Nencki Institute of Experimental Biology, 3 Pasteur Street, 02-093, Warsaw, Poland","Nencki Institute of Experimental Biology"],"affiliations":[{"raw_affiliation_string":"Department of Neurophysiology, Nencki Institute of Experimental Biology, 3 Pasteur Street, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I16778253"]},{"raw_affiliation_string":"Nencki Institute of Experimental Biology","institution_ids":["https://openalex.org/I16778253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060193385"],"corresponding_institution_ids":["https://openalex.org/I16778253"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":{"value":3190,"currency":"EUR","value_usd":4190},"fwci":3.3308,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.9285005,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"2","first_page":"181","last_page":"197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8062697649002075},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.7588021755218506},{"id":"https://openalex.org/keywords/brain-atlas","display_name":"Brain atlas","score":0.7129228115081787},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.708160936832428},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5525929927825928},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.49079975485801697},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.46162086725234985},{"id":"https://openalex.org/keywords/data-file","display_name":"Data file","score":0.4406091272830963},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.43198758363723755},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38286474347114563},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36579692363739014},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30025386810302734},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.2518523335456848},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2226887345314026},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2161499559879303},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13601675629615784}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8062697649002075},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.7588021755218506},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.7129228115081787},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.708160936832428},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5525929927825928},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.49079975485801697},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.46162086725234985},{"id":"https://openalex.org/C171730128","wikidata":"https://www.wikidata.org/wiki/Q5227290","display_name":"Data file","level":2,"score":0.4406091272830963},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.43198758363723755},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38286474347114563},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36579692363739014},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30025386810302734},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2518523335456848},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2226887345314026},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2161499559879303},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13601675629615784},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s12021-011-9138-6","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-011-9138-6","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-011-9138-6.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:22227717","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22227717","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3325030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3325030","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Neuroinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s12021-011-9138-6","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12021-011-9138-6","pdf_url":"https://link.springer.com/content/pdf/10.1007/s12021-011-9138-6.pdf","source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G6660225447","display_name":null,"funder_award_id":"co-financed","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8480619060","display_name":null,"funder_award_id":"POIG.02.03.00-00-003/09","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1965383030.pdf","grobid_xml":"https://content.openalex.org/works/W1965383030.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1522048223","https://openalex.org/W1562882904","https://openalex.org/W1585488465","https://openalex.org/W1964829616","https://openalex.org/W1965212122","https://openalex.org/W1973018590","https://openalex.org/W1975942563","https://openalex.org/W1990005524","https://openalex.org/W1995124264","https://openalex.org/W2002369321","https://openalex.org/W2012856443","https://openalex.org/W2013171582","https://openalex.org/W2014510234","https://openalex.org/W2015513982","https://openalex.org/W2026527241","https://openalex.org/W2038806095","https://openalex.org/W2047167129","https://openalex.org/W2048076599","https://openalex.org/W2056567746","https://openalex.org/W2058737102","https://openalex.org/W2076806187","https://openalex.org/W2081534285","https://openalex.org/W2086253252","https://openalex.org/W2089630302","https://openalex.org/W2102876814","https://openalex.org/W2115070053","https://openalex.org/W2123971620","https://openalex.org/W2127890285","https://openalex.org/W2136145485","https://openalex.org/W2163500296","https://openalex.org/W2163815564","https://openalex.org/W2324053316","https://openalex.org/W2330509222","https://openalex.org/W2404058514","https://openalex.org/W4233882242","https://openalex.org/W4243074427","https://openalex.org/W4247209124","https://openalex.org/W6631231365","https://openalex.org/W6635204425","https://openalex.org/W6653622597","https://openalex.org/W6945000140","https://openalex.org/W7033452965"],"related_works":["https://openalex.org/W3204859452","https://openalex.org/W2017687738","https://openalex.org/W2134338954","https://openalex.org/W3089312399","https://openalex.org/W3032858184","https://openalex.org/W2013284245","https://openalex.org/W52174868","https://openalex.org/W4252555072","https://openalex.org/W2793346709","https://openalex.org/W2090798606"],"abstract_inverted_index":{"One":[0],"of":[1,4,11,18,42,64,66,69,135,152,161,230,239],"the":[2,72,95,105,164,237],"challenges":[3],"modern":[5],"neuroscience":[6],"is":[7,146,180,202],"integrating":[8],"voluminous":[9],"data":[10,70,102,123,231],"diferent":[12],"modalities":[13],"derived":[14],"from":[15,139,158,173],"a":[16,23,150,159,168],"variety":[17],"specimens.":[19],"This":[20],"task":[21],"requires":[22],"common":[24],"spatial":[25],"framework":[26,234],"that":[27],"can":[28,183,196,223],"be":[29,185,197,225],"provided":[30,147],"by":[31,148,216],"brain":[32,73,137],"atlases.":[33],"The":[34,75,143,176,205,221,233],"first":[35],"atlases":[36,50,77,157],"were":[37],"limited":[38],"to":[39,54,93,115,132,209],"two-dimentional":[40],"presentation":[41],"structural":[43],"data.":[44,142],"Recently,":[45],"attempts":[46],"at":[47,227],"creating":[48],"3D":[49,76,125,171],"have":[51,81],"been":[52,82],"made":[53,198],"offer":[55],"navigation":[56],"within":[57,71],"non-standard":[58],"anatomical":[59],"planes":[60],"and":[61,101,124,166,182,188],"improve":[62],"capability":[63],"localization":[65],"different":[67],"types":[68],"volume.":[74],"available":[78],"so":[79],"far":[80],"created":[83],"using":[84,217],"frameworks":[85],"which":[86,154,190],"make":[87],"it":[88],"difficult":[89],"for":[90,236],"other":[91,121,213],"researchers":[92],"replicate":[94],"results.":[96],"To":[97],"facilitate":[98],"reproducible":[99,181],"research":[100],"sharing":[103],"in":[104],"field":[106],"we":[107],"propose":[108],"an":[109],"SVG-based":[110],"Common":[111],"Atlas":[112,127],"Format":[113],"(CAF)":[114],"store":[116],"2D":[117,140],"atlas":[118,141],"delineations":[119],"or":[120,242],"compatible":[122],"Brain":[126],"Reconstructor":[128],"(3dBAR),":[129],"software":[130,206],"dedicated":[131],"automated":[133],"reconstruction":[134,178,201],"three-dimensional":[136],"structures":[138],"basic":[144],"functionality":[145],"(1)":[149],"set":[151],"parsers":[153],"translate":[155],"various":[156],"number":[160],"formats":[162],"into":[163],"CAF,":[165],"(2)":[167],"module":[169],"generating":[170],"models":[172],"CAF":[174],"datasets.":[175],"whole":[177],"process":[179],"easily":[184,224],"configured,":[186],"tracked":[187],"reviewed,":[189],"facilitates":[191],"fixing":[192],"errors.":[193],"Manual":[194],"corrections":[195],"when":[199],"automatic":[200],"not":[203],"sufficient.":[204],"was":[207],"designed":[208],"simplify":[210],"interoperability":[211],"with":[212],"neuroinformatics":[214],"tools":[215],"open":[218],"file":[219],"formats.":[220],"content":[222],"exchanged":[226],"any":[228],"stage":[229],"processing.":[232],"allows":[235],"addition":[238],"new":[240],"public":[241],"proprietary":[243],"content.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
