{"id":"https://openalex.org/W7104658826","doi":"https://doi.org/10.1007/s11704-025-50324-0","title":"GFAKaleidos: a tool for computing and comparing pangenome graph statistics","display_name":"GFAKaleidos: a tool for computing and comparing pangenome graph statistics","publication_year":2025,"publication_date":"2025-11-11","ids":{"openalex":"https://openalex.org/W7104658826","doi":"https://doi.org/10.1007/s11704-025-50324-0"},"language":"en","primary_location":{"id":"doi:10.1007/s11704-025-50324-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11704-025-50324-0","pdf_url":null,"source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Yixin Xiang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088191","display_name":"Agricultural Genomics Institute at Shenzhen","ror":"https://ror.org/0066zpp98","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210088191","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yixin Xiang","raw_affiliation_strings":["College of Software, Nankai University, Tianjin, 300350, China","State Key Laboratory of Genome and Multi-omics Technologies, Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518000, China"],"affiliations":[{"raw_affiliation_string":"College of Software, Nankai University, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]},{"raw_affiliation_string":"State Key Laboratory of Genome and Multi-omics Technologies, Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518000, China","institution_ids":["https://openalex.org/I4210088191"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Keyu Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Keyu Liu","raw_affiliation_strings":["College of Software, Nankai University, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Software, Nankai University, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Leqi Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Leqi Wang","raw_affiliation_strings":["College of Software, Nankai University, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Software, Nankai University, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"last","author":{"id":null,"display_name":"Jianyu Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianyu Zhou","raw_affiliation_strings":["College of Software, Nankai University, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Software, Nankai University, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4210088191"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.58093557,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.23669999837875366,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.23669999837875366,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.12700000405311584,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.08179999887943268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5677000284194946},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.29260000586509705},{"id":"https://openalex.org/keywords/summary-statistics","display_name":"Summary statistics","score":0.2150000035762787},{"id":"https://openalex.org/keywords/database-query","display_name":"Database query","score":0.21150000393390656}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8212000131607056},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5677000284194946},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3312000036239624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31779998540878296},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2955000102519989},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.29260000586509705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24709999561309814},{"id":"https://openalex.org/C32792767","wikidata":"https://www.wikidata.org/wiki/Q1370484","display_name":"Summary statistics","level":2,"score":0.2150000035762787},{"id":"https://openalex.org/C2989070954","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database query","level":2,"score":0.21150000393390656},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.19329999387264252}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11704-025-50324-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11704-025-50324-0","pdf_url":null,"source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W3092652421","https://openalex.org/W4200597270","https://openalex.org/W4220680041","https://openalex.org/W4280583823","https://openalex.org/W4282923872","https://openalex.org/W4376118380","https://openalex.org/W4376133202","https://openalex.org/W4400423417","https://openalex.org/W4400932619","https://openalex.org/W4403609447"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-11T23:23:10.385787","created_date":"2025-11-11T00:00:00"}
