{"id":"https://openalex.org/W4404545771","doi":"https://doi.org/10.1007/s11704-024-40420-y","title":"PathActMarker: an R package for inferring pathway activity of complex diseases","display_name":"PathActMarker: an R package for inferring pathway activity of complex diseases","publication_year":2024,"publication_date":"2024-11-20","ids":{"openalex":"https://openalex.org/W4404545771","doi":"https://doi.org/10.1007/s11704-024-40420-y"},"language":"en","primary_location":{"id":"doi:10.1007/s11704-024-40420-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11704-024-40420-y","pdf_url":null,"source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100687807","display_name":"Xingyi Li","orcid":"https://orcid.org/0000-0002-6004-4174"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xingyi Li","raw_affiliation_strings":["Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen, 518063, China","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen, 518063, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100550950","display_name":"Jun Hao","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Hao","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028877201","display_name":"Zhelin Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhelin Zhao","raw_affiliation_strings":["School of Software, Northwestern Polytechnical University, Xi\u2019an, 710072, China","School of Software, Northwestern Polytechnical University, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Software, Northwestern Polytechnical University, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100638184","display_name":"Junming Li","orcid":"https://orcid.org/0000-0003-1409-3634"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junming Li","raw_affiliation_strings":["Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen, 518063, China","School of Software, Northwestern Polytechnical University, Xi\u2019an, 710072, China"],"affiliations":[{"raw_affiliation_string":"Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen, 518063, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Software, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088826157","display_name":"Xingyu Liao","orcid":"https://orcid.org/0000-0002-0061-1317"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingyu Liao","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, 410083, China","Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen, 518063, China"],"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Research & Development Institute of Northwestern Polytechnical University in Shenzhen, Shenzhen, 518063, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109723363","display_name":"Xuequn Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100687807"],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.7288,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.71938482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"19","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7873439788818359},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7683862447738647},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7503814697265625},{"id":"https://openalex.org/keywords/pathway-analysis","display_name":"Pathway analysis","score":0.45030415058135986},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44406700134277344},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4424522817134857},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4404107332229614},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3675099015235901},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3436453938484192},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23449909687042236},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1441466212272644},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10565772652626038},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09224170446395874}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7873439788818359},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7683862447738647},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7503814697265625},{"id":"https://openalex.org/C2779230013","wikidata":"https://www.wikidata.org/wiki/Q25303877","display_name":"Pathway analysis","level":4,"score":0.45030415058135986},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44406700134277344},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4424522817134857},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4404107332229614},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3675099015235901},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3436453938484192},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23449909687042236},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1441466212272644},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10565772652626038},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09224170446395874},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11704-024-40420-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11704-024-40420-y","pdf_url":null,"source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1992045522","https://openalex.org/W2010457001","https://openalex.org/W2011417152","https://openalex.org/W2123879591","https://openalex.org/W2158384363","https://openalex.org/W2159707944","https://openalex.org/W2954825129","https://openalex.org/W3185492931","https://openalex.org/W4212844381","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2591697403","https://openalex.org/W2944728705","https://openalex.org/W2904022177","https://openalex.org/W2359348847","https://openalex.org/W3011538607","https://openalex.org/W4294432981","https://openalex.org/W4321441197","https://openalex.org/W2953716828","https://openalex.org/W2469820710","https://openalex.org/W4321276295"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
