{"id":"https://openalex.org/W4399391276","doi":"https://doi.org/10.1007/s11704-024-3806-9","title":"SS-Pro: a simplified Siamese contrastive learning approach for protein surface representation","display_name":"SS-Pro: a simplified Siamese contrastive learning approach for protein surface representation","publication_year":2024,"publication_date":"2024-06-06","ids":{"openalex":"https://openalex.org/W4399391276","doi":"https://doi.org/10.1007/s11704-024-3806-9"},"language":"en","primary_location":{"id":"doi:10.1007/s11704-024-3806-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11704-024-3806-9","pdf_url":null,"source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089594331","display_name":"Ao Shen","orcid":"https://orcid.org/0009-0004-3117-9362"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ao Shen","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011879942","display_name":"Mingzhi Yuan","orcid":"https://orcid.org/0000-0003-1322-7530"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingzhi Yuan","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056720696","display_name":"Yingfan Ma","orcid":"https://orcid.org/0000-0002-5436-7997"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingfan Ma","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029371371","display_name":"Manning Wang","orcid":"https://orcid.org/0000-0002-9255-3897"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Manning Wang","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Science, Fudan University, Shanghai, 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, 200032, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5029371371"],"corresponding_institution_ids":["https://openalex.org/I133868755"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":0.8215,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.69747258,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"18","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8568969964981079},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.646484375},{"id":"https://openalex.org/keywords/surface","display_name":"Surface (topology)","score":0.5333791971206665},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4413449764251709},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.42208120226860046},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10575518012046814},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.08003291487693787}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8568969964981079},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.646484375},{"id":"https://openalex.org/C2776799497","wikidata":"https://www.wikidata.org/wiki/Q484298","display_name":"Surface (topology)","level":2,"score":0.5333791971206665},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4413449764251709},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.42208120226860046},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10575518012046814},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.08003291487693787},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11704-024-3806-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11704-024-3806-9","pdf_url":null,"source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2130479394","https://openalex.org/W2889895098","https://openalex.org/W2912083425","https://openalex.org/W2992752586","https://openalex.org/W3171007011","https://openalex.org/W3185671814","https://openalex.org/W4321769975","https://openalex.org/W4389126617"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W3204019825"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
