{"id":"https://openalex.org/W4404636578","doi":"https://doi.org/10.1007/s11704-024-31063-0","title":"Application of machine learning in drug side effect prediction: databases, methods, and challenges","display_name":"Application of machine learning in drug side effect prediction: databases, methods, and challenges","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4404636578","doi":"https://doi.org/10.1007/s11704-024-31063-0"},"language":"en","primary_location":{"id":"doi:10.1007/s11704-024-31063-0","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11704-024-31063-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11704-024-31063-0.pdf","source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s11704-024-31063-0.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061114972","display_name":"Haochen Zhao","orcid":"https://orcid.org/0000-0001-8794-3148"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haochen Zhao","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","School of Computer Science and Engineering, Central South University, Changsha, 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053729346","display_name":"Jian Zhong","orcid":"https://orcid.org/0009-0007-0010-3949"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Zhong","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","School of Computer Science and Engineering, Central South University, Changsha, 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052169513","display_name":"Xiao Liang","orcid":"https://orcid.org/0000-0001-5476-8304"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Liang","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","School of Computer Science and Engineering, Central South University, Changsha, 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106720785","display_name":"Chenliang Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenliang Xie","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","School of Computer Science and Engineering, Central South University, Changsha, 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064926845","display_name":"Shaokai Wang","orcid":"https://orcid.org/0000-0001-9645-5074"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shaokai Wang","raw_affiliation_strings":["David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, ON, N2L 3G1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, ON, N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5064926845"],"corresponding_institution_ids":["https://openalex.org/I151746483"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":{"value":2290,"currency":"EUR","value_usd":2890},"fwci":9.8943,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.98738697,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"19","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8874512910842896},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.56309974193573},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5347171425819397},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.458883136510849},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37347477674484253}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8874512910842896},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.56309974193573},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5347171425819397},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.458883136510849},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37347477674484253}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11704-024-31063-0","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11704-024-31063-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11704-024-31063-0.pdf","source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1007/s11704-024-31063-0","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11704-024-31063-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11704-024-31063-0.pdf","source":{"id":"https://openalex.org/S4210231404","display_name":"Frontiers of Computer Science","issn_l":"2095-2228","issn":["2095-2228","2095-2236"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311889","host_organization_name":"Higher Education Press","host_organization_lineage":["https://openalex.org/P4310311889"],"host_organization_lineage_names":["Higher Education Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers of Computer Science","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G4785461891","display_name":null,"funder_award_id":"U22A2041","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8450505776","display_name":null,"funder_award_id":"62072473","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404636578.pdf","grobid_xml":"https://content.openalex.org/works/W4404636578.grobid-xml"},"referenced_works_count":120,"referenced_works":["https://openalex.org/W1966634788","https://openalex.org/W1973959688","https://openalex.org/W1974494493","https://openalex.org/W1981173089","https://openalex.org/W2003414656","https://openalex.org/W2031133736","https://openalex.org/W2034537627","https://openalex.org/W2044727478","https://openalex.org/W2047708582","https://openalex.org/W2049946556","https://openalex.org/W2051730284","https://openalex.org/W2054141820","https://openalex.org/W2063280109","https://openalex.org/W2071537189","https://openalex.org/W2071552459","https://openalex.org/W2105953200","https://openalex.org/W2107783493","https://openalex.org/W2117397379","https://openalex.org/W2119597015","https://openalex.org/W2136127280","https://openalex.org/W2137775956","https://openalex.org/W2138995863","https://openalex.org/W2144212877","https://openalex.org/W2144487656","https://openalex.org/W2145578524","https://openalex.org/W2152454589","https://openalex.org/W2154851992","https://openalex.org/W2155764317","https://openalex.org/W2161013445","https://openalex.org/W2173079655","https://openalex.org/W2177317049","https://openalex.org/W2234451305","https://openalex.org/W2247448379","https://openalex.org/W2289235434","https://openalex.org/W2294516783","https://openalex.org/W2398350456","https://openalex.org/W2528445297","https://openalex.org/W2531563875","https://openalex.org/W2595626209","https://openalex.org/W2600452401","https://openalex.org/W2624775565","https://openalex.org/W2767891136","https://openalex.org/W2769065924","https://openalex.org/W2789789321","https://openalex.org/W2895757710","https://openalex.org/W2896605526","https://openalex.org/W2897753544","https://openalex.org/W2900090807","https://openalex.org/W2902466736","https://openalex.org/W2902773418","https://openalex.org/W2906083215","https://openalex.org/W2911293880","https://openalex.org/W2912269676","https://openalex.org/W2912500072","https://openalex.org/W2914304175","https://openalex.org/W2962756421","https://openalex.org/W2967790968","https://openalex.org/W2969787166","https://openalex.org/W3016077459","https://openalex.org/W3018980093","https://openalex.org/W3022124687","https://openalex.org/W3022502706","https://openalex.org/W3024894285","https://openalex.org/W3030186245","https://openalex.org/W3035943921","https://openalex.org/W3043872269","https://openalex.org/W3085898256","https://openalex.org/W3089843526","https://openalex.org/W3104097132","https://openalex.org/W3133596586","https://openalex.org/W3134990281","https://openalex.org/W3135028703","https://openalex.org/W3135755067","https://openalex.org/W3136918052","https://openalex.org/W3138383701","https://openalex.org/W3139253280","https://openalex.org/W3144008936","https://openalex.org/W3157889929","https://openalex.org/W3171798071","https://openalex.org/W3174291985","https://openalex.org/W3196689514","https://openalex.org/W3199673018","https://openalex.org/W3203949288","https://openalex.org/W3205082786","https://openalex.org/W3206046197","https://openalex.org/W3208102118","https://openalex.org/W3209941363","https://openalex.org/W3213715512","https://openalex.org/W4200351086","https://openalex.org/W4205138971","https://openalex.org/W4206183578","https://openalex.org/W4211238337","https://openalex.org/W4214621766","https://openalex.org/W4214946922","https://openalex.org/W4221089799","https://openalex.org/W4224929280","https://openalex.org/W4225646766","https://openalex.org/W4243519268","https://openalex.org/W4280570233","https://openalex.org/W4280614598","https://openalex.org/W4283391017","https://openalex.org/W4293492272","https://openalex.org/W4294216483","https://openalex.org/W4294908374","https://openalex.org/W4307093167","https://openalex.org/W4309400060","https://openalex.org/W4312210475","https://openalex.org/W4313405519","https://openalex.org/W4321374315","https://openalex.org/W4376873201","https://openalex.org/W4379967792","https://openalex.org/W4381715901","https://openalex.org/W4383998566","https://openalex.org/W4386033873","https://openalex.org/W4386136390","https://openalex.org/W4386306070","https://openalex.org/W4386409309","https://openalex.org/W4386602082","https://openalex.org/W4387219395","https://openalex.org/W4389410112"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Abstract":[0],"Drug":[1],"side":[2,49,60,107,121,156,178,194,212],"effects":[3,50,61,195,213],"have":[4,82,96],"become":[5],"paramount":[6],"concerns":[7],"in":[8,40,72,118,209,226],"drug":[9,59,106,120,155,177,211],"safety":[10],"research,":[11],"ranking":[12],"as":[13],"the":[14,28,46,75,85,124,132,152,203,206],"fourth":[15],"leading":[16],"cause":[17],"of":[18,31,48,58,78,87,115,134,154,187],"mortality":[19],"following":[20],"cardiovascular":[21],"diseases,":[22],"cancer,":[23],"and":[24,34,65,74,104,147,171,200,218],"infectious":[25],"diseases.":[26],"Simultaneously,":[27],"widespread":[29],"use":[30],"multiple":[32],"prescription":[33],"over-the-counter":[35],"medications":[36],"by":[37,142,197,220],"many":[38],"patients":[39],"their":[41],"daily":[42],"lives":[43],"has":[44],"heightened":[45],"occurrence":[47],"resulting":[51],"from":[52,127],"Drug-Drug":[53],"Interactions":[54],"(DDIs).":[55],"Traditionally,":[56],"assessments":[57],"relied":[62],"on":[63,92],"resource-intensive":[64],"time-consuming":[66],"laboratory":[67],"experiments.":[68],"However,":[69],"recent":[70,116],"advancements":[71,117],"bioinformatics":[73],"rapid":[76],"evolution":[77],"artificial":[79],"intelligence":[80],"technology":[81],"led":[83],"to":[84,131,151,184],"accumulation":[86],"extensive":[88],"biomedical":[89],"data.":[90],"Based":[91],"this":[93,227],"foundation,":[94],"researchers":[95],"developed":[97],"diverse":[98],"machine":[99,136,164,215],"learning":[100,137,165,216],"methods":[101,166,181],"for":[102,168,192],"discovering":[103],"detecting":[105],"effects.":[108,179],"This":[109],"paper":[110],"provides":[111],"a":[112,185],"comprehensive":[113],"overview":[114],"predicting":[119,210],"effects,":[122],"encompassing":[123],"entire":[125],"spectrum":[126],"biological":[128],"data":[129],"acquisition":[130],"development":[133],"sophisticated":[135],"models.":[138],"The":[139,160],"review":[140,204],"commences":[141],"elucidating":[143],"widely":[144],"recognized":[145],"datasets":[146],"Web":[148],"servers":[149],"relevant":[150],"field":[153],"effect":[157],"prediction.":[158],"Subsequently,":[159],"study":[161],"delves":[162],"into":[163],"customized":[167],"binary,":[169],"multi-class,":[170],"multi-label":[172],"classification":[173],"tasks":[174],"associated":[175],"with":[176],"These":[180],"are":[182],"applied":[183],"variety":[186],"representative":[188],"computational":[189],"models":[190],"designed":[191],"identifying":[193],"induced":[196],"single":[198],"drugs":[199],"DDIs.":[201],"Finally,":[202],"outlines":[205],"challenges":[207],"encountered":[208],"using":[214],"approaches":[217],"concludes":[219],"illuminating":[221],"important":[222],"future":[223],"research":[224],"directions":[225],"dynamic":[228],"field.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":5}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
