{"id":"https://openalex.org/W3113225385","doi":"https://doi.org/10.1007/s11634-020-00428-1","title":"Adapted single-cell consensus clustering (adaSC3)","display_name":"Adapted single-cell consensus clustering (adaSC3)","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3113225385","doi":"https://doi.org/10.1007/s11634-020-00428-1","mag":"3113225385"},"language":"en","primary_location":{"id":"doi:10.1007/s11634-020-00428-1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11634-020-00428-1","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11634-020-00428-1.pdf","source":{"id":"https://openalex.org/S4210175730","display_name":"Advances in Data Analysis and Classification","issn_l":"1862-5355","issn":["1862-5355","1862-5347"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Data Analysis and Classification","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s11634-020-00428-1.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020904196","display_name":"Cornelia Fuetterer","orcid":"https://orcid.org/0000-0002-8354-6660"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Cornelia Fuetterer","raw_affiliation_strings":["Department of Statistics, Ludwig-Maximilians-University Munich, 80539, Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8354-6660","affiliations":[{"raw_affiliation_string":"Department of Statistics, Ludwig-Maximilians-University Munich, 80539, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028359392","display_name":"Thomas Augustin","orcid":"https://orcid.org/0000-0002-1854-6226"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Augustin","raw_affiliation_strings":["Department of Statistics, Ludwig-Maximilians-University Munich, 80539, Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1854-6226","affiliations":[{"raw_affiliation_string":"Department of Statistics, Ludwig-Maximilians-University Munich, 80539, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063476572","display_name":"Christiane Fuchs","orcid":"https://orcid.org/0000-0003-3565-8315"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christiane Fuchs","raw_affiliation_strings":["Department of Mathematics, Technical University of Munich, 85747, Garching, Germany","Faculty of Business Administration and Economics, Bielefeld University, 33615, Bielefeld, Germany","Institute of Computational Biology, Helmholtz Zentrum Munich, 85764, Neuherberg, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3565-8315","affiliations":[{"raw_affiliation_string":"Department of Mathematics, Technical University of Munich, 85747, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Faculty of Business Administration and Economics, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Zentrum Munich, 85764, Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5020904196"],"corresponding_institution_ids":["https://openalex.org/I8204097"],"apc_list":{"value":2750,"currency":"USD","value_usd":2750},"apc_paid":{"value":2750,"currency":"USD","value_usd":2750},"fwci":0.0756,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.42457867,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"14","issue":"4","first_page":"885","last_page":"896"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9699000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7752768397331238},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.6077907085418701},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.5953570008277893},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5725605487823486},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5684581398963928},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.49255236983299255},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46574532985687256},{"id":"https://openalex.org/keywords/clustering-high-dimensional-data","display_name":"Clustering high-dimensional data","score":0.4476286470890045},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3903823494911194},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35809630155563354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3413431644439697},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20573562383651733}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7752768397331238},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.6077907085418701},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.5953570008277893},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5725605487823486},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5684581398963928},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.49255236983299255},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46574532985687256},{"id":"https://openalex.org/C184509293","wikidata":"https://www.wikidata.org/wiki/Q5136711","display_name":"Clustering high-dimensional data","level":3,"score":0.4476286470890045},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3903823494911194},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35809630155563354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3413431644439697},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20573562383651733},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1007/s11634-020-00428-1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11634-020-00428-1","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11634-020-00428-1.pdf","source":{"id":"https://openalex.org/S4210175730","display_name":"Advances in Data Analysis and Classification","issn_l":"1862-5355","issn":["1862-5355","1862-5347"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Data Analysis and Classification","raw_type":"journal-article"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:60813","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60813","pdf_url":"https://push-zb.helmholtz-munich.de/deliver.php?id=29114","source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Adv. Data Anal. Classif. 14, 885-896 (2020)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:RePEc:spr:advdac:v:14:y:2020:i:4:d:10.1007_s11634-020-00428-1","is_oa":false,"landing_page_url":"http://link.springer.com/10.1007/s11634-020-00428-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:epub.ub.uni-muenchen.de:75716","is_oa":true,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bvb:19-epub-75716-7","pdf_url":null,"source":{"id":"https://openalex.org/S4210175730","display_name":"Advances in Data Analysis and Classification","issn_l":"1862-5355","issn":["1862-5355","1862-5347"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Advances in Data Analysis and Classification","raw_type":"doc-type:article"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:60813","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=60813","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Adv. Data Anal. Classif. 14, 885-896 (2020)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pub.uni-bielefeld.de:2950212","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2950212","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":{"id":"doi:10.1007/s11634-020-00428-1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11634-020-00428-1","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11634-020-00428-1.pdf","source":{"id":"https://openalex.org/S4210175730","display_name":"Advances in Data Analysis and Classification","issn_l":"1862-5355","issn":["1862-5355","1862-5347"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Data Analysis and Classification","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323390","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3113225385.pdf","grobid_xml":"https://content.openalex.org/works/W3113225385.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1993287310","https://openalex.org/W2007058060","https://openalex.org/W2007439698","https://openalex.org/W2023887100","https://openalex.org/W2068881679","https://openalex.org/W2097308346","https://openalex.org/W2099236226","https://openalex.org/W2099474055","https://openalex.org/W2101234009","https://openalex.org/W2111882541","https://openalex.org/W2117684310","https://openalex.org/W2120205807","https://openalex.org/W2128120736","https://openalex.org/W2149573463","https://openalex.org/W2171045458","https://openalex.org/W2307567449","https://openalex.org/W2598326928","https://openalex.org/W2884197618","https://openalex.org/W2951764674","https://openalex.org/W2966180543","https://openalex.org/W3089331402","https://openalex.org/W3100924000","https://openalex.org/W4213367101"],"related_works":["https://openalex.org/W2579148721","https://openalex.org/W4387893611","https://openalex.org/W2347335694","https://openalex.org/W2091056927","https://openalex.org/W2067407580","https://openalex.org/W4317486777","https://openalex.org/W4389669152","https://openalex.org/W2038514069","https://openalex.org/W1967233468","https://openalex.org/W2009181529"],"abstract_inverted_index":{"Abstract":[0],"The":[1,29],"analysis":[2,84],"of":[3,9,26,31,39,88,111,120,124,130,134,145,167],"single-cell":[4,53,72,91],"RNA":[5,73],"sequencing":[6,74],"data":[7,17,128],"is":[8],"great":[10],"importance":[11],"in":[12,23,45,122,139],"health":[13],"research.":[14],"It":[15],"challenges":[16],"scientists,":[18],"but":[19],"has":[20],"enormous":[21],"potential":[22],"the":[24,67,98,109,118,127,131],"context":[25],"personalized":[27],"medicine.":[28],"clustering":[30,55,93],"single":[32,112],"cells":[33,113],"aims":[34],"to":[35,96],"detect":[36],"different":[37],"subgroups":[38],"cell":[40],"populations":[41],"within":[42],"a":[43,46,81,104,140,163],"patient":[44],"data-driven":[47],"manner.":[48],"Some":[49],"comparison":[50,144],"studies":[51],"denote":[52],"consensus":[54,92],"(SC3),":[56],"proposed":[57],"by":[58,101],"Kiselev":[59],"et":[60],"al.":[61],"(Nat":[62],"Methods":[63],"14(5):483\u2013486,":[64],"2017),":[65],"as":[66,136,138,149,151],"best":[68],"method":[69,106],"for":[70],"classifying":[71],"data.":[75],"SC3":[76,135,148],"includes":[77],"Laplacian":[78],"eigenmaps":[79],"and":[80],"principal":[82],"component":[83],"(PCA).":[85],"Our":[86],"proposal":[87],"unsupervised":[89],"adapted":[90],"(adaSC3)":[94],"suggests":[95],"replace":[97],"linear":[99],"PCA":[100],"diffusion":[102],"maps,":[103],"non-linear":[105],"that":[107],"takes":[108],"transition":[110],"into":[114],"account.":[115],"We":[116],"investigate":[117],"performance":[119],"adaSC3":[121,146],"terms":[123],"accuracy":[125],"on":[126,156],"sets":[129],"original":[132],"source":[133],"well":[137,150],"simulation":[141],"study.":[142],"A":[143],"with":[147,152],"related":[153],"algorithms":[154],"based":[155],"further":[157],"alternative":[158],"dimension":[159],"reduction":[160],"techniques":[161],"shows":[162],"quite":[164],"convincing":[165],"behavior":[166],"adaSC3.":[168]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
