{"id":"https://openalex.org/W4406158925","doi":"https://doi.org/10.1007/s11548-024-03313-w","title":"Diagnosing Helicobacter pylori using autoencoders and limited annotations through anomalous staining patterns in IHC whole slide images","display_name":"Diagnosing Helicobacter pylori using autoencoders and limited annotations through anomalous staining patterns in IHC whole slide images","publication_year":2025,"publication_date":"2025-01-08","ids":{"openalex":"https://openalex.org/W4406158925","doi":"https://doi.org/10.1007/s11548-024-03313-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/39779639"},"language":"en","primary_location":{"id":"doi:10.1007/s11548-024-03313-w","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11548-024-03313-w","pdf_url":null,"source":{"id":"https://openalex.org/S181408163","display_name":"International Journal of Computer Assisted Radiology and Surgery","issn_l":"1861-6410","issn":["1861-6410","1861-6429"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Computer Assisted Radiology and Surgery","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104176192","display_name":"Pau Cano","orcid":"https://orcid.org/0000-0002-0969-7858"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I4210129656","display_name":"Centre for Research on Ecology and Forestry Applications","ror":"https://ror.org/03abrgd14","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210129656","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Pau Cano","raw_affiliation_strings":["Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. pcano@cvc.uab.cat","Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. pcano@cvc.uab.cat","Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain","Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0969-7858","affiliations":[{"raw_affiliation_string":"Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. pcano@cvc.uab.cat","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. pcano@cvc.uab.cat","institution_ids":["https://openalex.org/I4210129656"]},{"raw_affiliation_string":"Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053944948","display_name":"Eva Musul\u00e9n","orcid":"https://orcid.org/0000-0002-9667-6464"},"institutions":[{"id":"https://openalex.org/I4210119948","display_name":"Hospital General de Catalunya","ror":"https://ror.org/02k4qm934","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210119948"]},{"id":"https://openalex.org/I4210144824","display_name":"Fundaci\u00f3n Josep Carreras Contra la Leucemia","ror":"https://ror.org/03e1n9x27","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210144824"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eva Musulen","raw_affiliation_strings":["Institut de Recerca contra la Leuc\u00e8mia Josep Carreras (IJC), Badalona, 08916, Catalunya, Spain","Pathology Department, Hospital Universitari General de Catalunya-Grupo QuironSalud, Sant Cugat del Vall\u00e8s, 08195, Catalunya, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Recerca contra la Leuc\u00e8mia Josep Carreras (IJC), Badalona, 08916, Catalunya, Spain","institution_ids":["https://openalex.org/I4210144824"]},{"raw_affiliation_string":"Pathology Department, Hospital Universitari General de Catalunya-Grupo QuironSalud, Sant Cugat del Vall\u00e8s, 08195, Catalunya, Spain","institution_ids":["https://openalex.org/I4210119948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046727085","display_name":"D\u00e9bora Gil","orcid":"https://orcid.org/0000-0002-2770-4767"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I4210129656","display_name":"Centre for Research on Ecology and Forestry Applications","ror":"https://ror.org/03abrgd14","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210129656","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Debora Gil","raw_affiliation_strings":["Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. debora@cvc.uab.cat","Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. debora@cvc.uab.cat","Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain","Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. debora@cvc.uab.cat","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain. debora@cvc.uab.cat","institution_ids":["https://openalex.org/I4210129656"]},{"raw_affiliation_string":"Comp. Sci. Dep, Universitat Aut\u00f2noma de Barcelona, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Computer Vision Center, Campus UAB, Cerdanyola del Vall\u00e8s, 08193, Catalunya, Spain","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046727085","https://openalex.org/A5104176192"],"corresponding_institution_ids":["https://openalex.org/I123044942","https://openalex.org/I4210129656"],"apc_list":{"value":4890,"currency":"USD","value_usd":4890},"apc_paid":null,"fwci":3.3735,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.91456705,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"20","issue":"4","first_page":"765","last_page":"773"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.7024000287055969,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.7024000287055969,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.07859999686479568,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.07329999655485153,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7101355791091919},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7076797485351562},{"id":"https://openalex.org/keywords/thresholding","display_name":"Thresholding","score":0.7008118033409119},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6194396018981934},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5430826544761658},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.47644928097724915},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4689347743988037},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.44841188192367554},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.42831629514694214},{"id":"https://openalex.org/keywords/helicobacter-pylori","display_name":"Helicobacter pylori","score":0.427725613117218},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15298792719841003}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7101355791091919},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7076797485351562},{"id":"https://openalex.org/C191178318","wikidata":"https://www.wikidata.org/wiki/Q2256906","display_name":"Thresholding","level":3,"score":0.7008118033409119},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6194396018981934},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5430826544761658},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.47644928097724915},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4689347743988037},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.44841188192367554},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.42831629514694214},{"id":"https://openalex.org/C2776409635","wikidata":"https://www.wikidata.org/wiki/Q180556","display_name":"Helicobacter pylori","level":2,"score":0.427725613117218},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15298792719841003},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013194","descriptor_name":"Staining and Labeling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013194","descriptor_name":"Staining and Labeling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013194","descriptor_name":"Staining and Labeling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D016481","descriptor_name":"Helicobacter Infections","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s11548-024-03313-w","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11548-024-03313-w","pdf_url":null,"source":{"id":"https://openalex.org/S181408163","display_name":"International Journal of Computer Assisted Radiology and Surgery","issn_l":"1861-6410","issn":["1861-6410","1861-6429"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Computer Assisted Radiology and Surgery","raw_type":"journal-article"},{"id":"pmid:39779639","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39779639","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of computer assisted radiology and surgery","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G2531599262","display_name":null,"funder_award_id":"2021SGR01623","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"},{"id":"https://openalex.org/G8298496326","display_name":null,"funder_award_id":"2021-126776OB-C21","funder_id":"https://openalex.org/F4320326262","funder_display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a"}],"funders":[{"id":"https://openalex.org/F4320326262","display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a","ror":"https://ror.org/03sv46s19"},{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1973908563","https://openalex.org/W2073924320","https://openalex.org/W2118056643","https://openalex.org/W2157825442","https://openalex.org/W2295107390","https://openalex.org/W2883935556","https://openalex.org/W2895484887","https://openalex.org/W3094590080","https://openalex.org/W3096655658","https://openalex.org/W3110711628","https://openalex.org/W3186260157","https://openalex.org/W4281823289","https://openalex.org/W4285821229","https://openalex.org/W4296692854","https://openalex.org/W4385406592","https://openalex.org/W4386352512","https://openalex.org/W4392947521"],"related_works":["https://openalex.org/W1542224353","https://openalex.org/W1661087619","https://openalex.org/W2116854923","https://openalex.org/W2750730210","https://openalex.org/W2236974868","https://openalex.org/W4312766348","https://openalex.org/W4233939244","https://openalex.org/W2730764323","https://openalex.org/W3123806511","https://openalex.org/W1976727107"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
