{"id":"https://openalex.org/W4414223624","doi":"https://doi.org/10.1007/s11517-025-03444-5","title":"Exploring universal segmentation models for automatic quantification of cardiac functional parameters from zebrafish heartbeat videos","display_name":"Exploring universal segmentation models for automatic quantification of cardiac functional parameters from zebrafish heartbeat videos","publication_year":2025,"publication_date":"2025-09-16","ids":{"openalex":"https://openalex.org/W4414223624","doi":"https://doi.org/10.1007/s11517-025-03444-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/40956522"},"language":"en","primary_location":{"id":"doi:10.1007/s11517-025-03444-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11517-025-03444-5","pdf_url":null,"source":{"id":"https://openalex.org/S46300952","display_name":"Medical & Biological Engineering & Computing","issn_l":"0140-0118","issn":["0140-0118","1741-0444"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical &amp; Biological Engineering &amp; Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100335705","display_name":"Yali Wang","orcid":"https://orcid.org/0000-0002-2999-7428"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yali Wang","raw_affiliation_strings":["School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079704683","display_name":"Haochun Shi","orcid":"https://orcid.org/0000-0003-4531-5842"},"institutions":[{"id":"https://openalex.org/I4210087188","display_name":"Impact Assessment","ror":"https://ror.org/004m2d892","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087188"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haochun Shi","raw_affiliation_strings":["State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, School of Environmental Science and Engineering, Shanghai Jiao Tong University, No. 800 Dongchuan Road, Shanghai, 200240, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, School of Environmental Science and Engineering, Shanghai Jiao Tong University, No. 800 Dongchuan Road, Shanghai, 200240, Shanghai, China","institution_ids":["https://openalex.org/I4210087188"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113405910","display_name":"Xingye Qiao","orcid":"https://orcid.org/0009-0000-0205-2937"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingye Qiao","raw_affiliation_strings":["School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042937962","display_name":"Fengyu Cong","orcid":"https://orcid.org/0000-0003-0058-2429"},"institutions":[{"id":"https://openalex.org/I19002584","display_name":"JAMK University of Applied Sciences","ror":"https://ror.org/01dn2ng71","country_code":"FI","type":"education","lineage":["https://openalex.org/I19002584"]},{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]},{"id":"https://openalex.org/I4210140036","display_name":"Central Finland Health Care District","ror":"https://ror.org/054h11b04","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210140036"]},{"id":"https://openalex.org/I94722563","display_name":"University of Jyv\u00e4skyl\u00e4","ror":"https://ror.org/05n3dz165","country_code":"FI","type":"education","lineage":["https://openalex.org/I94722563"]}],"countries":["CN","FI"],"is_corresponding":false,"raw_author_name":"Fengyu Cong","raw_affiliation_strings":["Faculty of Information Technology, University of Jyv\u00e4skyl\u00e4, Mattilanniemi 2, Jyv\u00e4skyl\u00e4, 40014, Central Finland, Finland","Key Laboratory of Integrated Circuit and Biomedical Electronic System, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China","School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China"],"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, University of Jyv\u00e4skyl\u00e4, Mattilanniemi 2, Jyv\u00e4skyl\u00e4, 40014, Central Finland, Finland","institution_ids":["https://openalex.org/I94722563","https://openalex.org/I4210140036","https://openalex.org/I19002584"]},{"raw_affiliation_string":"Key Laboratory of Integrated Circuit and Biomedical Electronic System, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]},{"raw_affiliation_string":"School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101495975","display_name":"Yanbin Zhao","orcid":"https://orcid.org/0000-0001-5632-5371"},"institutions":[{"id":"https://openalex.org/I4210087188","display_name":"Impact Assessment","ror":"https://ror.org/004m2d892","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087188"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanbin Zhao","raw_affiliation_strings":["State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, School of Environmental Science and Engineering, Shanghai Jiao Tong University, No. 800 Dongchuan Road, Shanghai, 200240, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, School of Environmental Science and Engineering, Shanghai Jiao Tong University, No. 800 Dongchuan Road, Shanghai, 200240, Shanghai, China","institution_ids":["https://openalex.org/I4210087188"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101554514","display_name":"Hongming Xu","orcid":"https://orcid.org/0009-0009-6255-263X"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongming Xu","raw_affiliation_strings":["Key Laboratory of Integrated Circuit and Biomedical Electronic System, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China. mxu@dlut.edu.cn","School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China. mxu@dlut.edu.cn"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Integrated Circuit and Biomedical Electronic System, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China. mxu@dlut.edu.cn","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Biomedical Engineering, Faculty of Medicine, Dalian University of Technology, No. 2 Linggong Road, Dalian, 116024, Liaoning Province, China. mxu@dlut.edu.cn","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100335705"],"corresponding_institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23840121,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"64","issue":"1","first_page":"147","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12697","display_name":"Water Quality Monitoring Technologies","score":0.9361000061035156,"subfield":{"id":"https://openalex.org/subfields/2312","display_name":"Water Science and Technology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12697","display_name":"Water Quality Monitoring Technologies","score":0.9361000061035156,"subfield":{"id":"https://openalex.org/subfields/2312","display_name":"Water Science and Technology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heartbeat","display_name":"Heartbeat","score":0.9178000092506409},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7508000135421753},{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.7322999835014343},{"id":"https://openalex.org/keywords/cardiac-ventricle","display_name":"Cardiac Ventricle","score":0.6323000192642212},{"id":"https://openalex.org/keywords/cardiac-cycle","display_name":"Cardiac cycle","score":0.5072000026702881},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.41119998693466187},{"id":"https://openalex.org/keywords/cardiac-function-curve","display_name":"Cardiac function curve","score":0.39629998803138733},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39070001244544983}],"concepts":[{"id":"https://openalex.org/C13852961","wikidata":"https://www.wikidata.org/wiki/Q17021880","display_name":"Heartbeat","level":2,"score":0.9178000092506409},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7508000135421753},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.7322999835014343},{"id":"https://openalex.org/C2910288590","wikidata":"https://www.wikidata.org/wiki/Q2002035","display_name":"Cardiac Ventricle","level":3,"score":0.6323000192642212},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5386999845504761},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5174000263214111},{"id":"https://openalex.org/C99398487","wikidata":"https://www.wikidata.org/wiki/Q257319","display_name":"Cardiac cycle","level":2,"score":0.5072000026702881},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.41119998693466187},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4016000032424927},{"id":"https://openalex.org/C111566952","wikidata":"https://www.wikidata.org/wiki/Q1303462","display_name":"Cardiac function curve","level":3,"score":0.39629998803138733},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39070001244544983},{"id":"https://openalex.org/C2910207319","wikidata":"https://www.wikidata.org/wiki/Q2002035","display_name":"Left Ventricles","level":3,"score":0.3260999917984009},{"id":"https://openalex.org/C2910163948","wikidata":"https://www.wikidata.org/wiki/Q2118956","display_name":"Cardiac toxicity","level":3,"score":0.31790000200271606},{"id":"https://openalex.org/C183683566","wikidata":"https://www.wikidata.org/wiki/Q5038741","display_name":"Cardiovascular physiology","level":2,"score":0.3059000074863434},{"id":"https://openalex.org/C2780040984","wikidata":"https://www.wikidata.org/wiki/Q79785","display_name":"Electrocardiography","level":2,"score":0.30300000309944153},{"id":"https://openalex.org/C61381695","wikidata":"https://www.wikidata.org/wiki/Q3302130","display_name":"Cardiac electrophysiology","level":3,"score":0.30160000920295715},{"id":"https://openalex.org/C164705383","wikidata":"https://www.wikidata.org/wiki/Q10379","display_name":"Cardiology","level":1,"score":0.29319998621940613},{"id":"https://openalex.org/C2776127602","wikidata":"https://www.wikidata.org/wiki/Q5038319","display_name":"Cardiac imaging","level":2,"score":0.28529998660087585},{"id":"https://openalex.org/C2908750889","wikidata":"https://www.wikidata.org/wiki/Q5038709","display_name":"Heart Function Tests","level":2,"score":0.2612999975681305},{"id":"https://openalex.org/C146549078","wikidata":"https://www.wikidata.org/wiki/Q191944","display_name":"Exoskeleton","level":2,"score":0.25529998540878296},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.2533999979496002}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D006339","descriptor_name":"Heart Rate","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D006339","descriptor_name":"Heart Rate","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D006352","descriptor_name":"Heart Ventricles","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D006352","descriptor_name":"Heart Ventricles","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s11517-025-03444-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11517-025-03444-5","pdf_url":null,"source":{"id":"https://openalex.org/S46300952","display_name":"Medical & Biological Engineering & Computing","issn_l":"0140-0118","issn":["0140-0118","1741-0444"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical &amp; Biological Engineering &amp; Computing","raw_type":"journal-article"},{"id":"pmid:40956522","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40956522","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical & biological engineering & computing","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1525465078","https://openalex.org/W1901129140","https://openalex.org/W2098324477","https://openalex.org/W2194775991","https://openalex.org/W2287791542","https://openalex.org/W2327801956","https://openalex.org/W2559827185","https://openalex.org/W2560023338","https://openalex.org/W2565639579","https://openalex.org/W2592064032","https://openalex.org/W2593883319","https://openalex.org/W2727743182","https://openalex.org/W2736304174","https://openalex.org/W2752782242","https://openalex.org/W2884822772","https://openalex.org/W2895340641","https://openalex.org/W2910628332","https://openalex.org/W2913028483","https://openalex.org/W2955058313","https://openalex.org/W2963091558","https://openalex.org/W2963150697","https://openalex.org/W2963163009","https://openalex.org/W2963727650","https://openalex.org/W2964217532","https://openalex.org/W2964309882","https://openalex.org/W2976303335","https://openalex.org/W2981689412","https://openalex.org/W2982220924","https://openalex.org/W2985459778","https://openalex.org/W2993235622","https://openalex.org/W3005011670","https://openalex.org/W3038091703","https://openalex.org/W3046665373","https://openalex.org/W3083589648","https://openalex.org/W3107634219","https://openalex.org/W3109301572","https://openalex.org/W3112139896","https://openalex.org/W3123580712","https://openalex.org/W3144185459","https://openalex.org/W3168742615","https://openalex.org/W4292549041","https://openalex.org/W4296828778","https://openalex.org/W4312815172","https://openalex.org/W4323533046","https://openalex.org/W4380988367","https://openalex.org/W4389623270","https://openalex.org/W4390874575","https://openalex.org/W4406264033"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-02-04T23:10:29.248076","created_date":"2025-10-10T00:00:00"}
