{"id":"https://openalex.org/W4382918145","doi":"https://doi.org/10.1007/s11517-023-02837-8","title":"ViralVectors: compact and scalable alignment-free virome feature generation","display_name":"ViralVectors: compact and scalable alignment-free virome feature generation","publication_year":2023,"publication_date":"2023-07-03","ids":{"openalex":"https://openalex.org/W4382918145","doi":"https://doi.org/10.1007/s11517-023-02837-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/37395885"},"language":"en","primary_location":{"id":"doi:10.1007/s11517-023-02837-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11517-023-02837-8","pdf_url":null,"source":{"id":"https://openalex.org/S46300952","display_name":"Medical & Biological Engineering & Computing","issn_l":"0140-0118","issn":["0140-0118","1741-0444"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical &amp; Biological Engineering &amp; Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064858842","display_name":"Sarwan Ali","orcid":"https://orcid.org/0000-0001-8121-2168"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sarwan Ali","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA. sali85@student.gsu.edu","Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA. sali85@student.gsu.edu","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017366862","display_name":"Prakash Chourasia","orcid":"https://orcid.org/0000-0002-1443-2192"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prakash Chourasia","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056500227","display_name":"Zahra Tayebi","orcid":"https://orcid.org/0000-0002-3671-3091"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zahra Tayebi","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040699777","display_name":"Babatunde Kazeem Bello","orcid":"https://orcid.org/0000-0001-5451-0274"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Babatunde Bello","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026228482","display_name":"Murray Patterson","orcid":"https://orcid.org/0000-0002-4329-0234"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Murray Patterson","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5064858842"],"corresponding_institution_ids":["https://openalex.org/I181565077"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":1.5279,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.82189301,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"61","issue":"10","first_page":"2607","last_page":"2626"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6889756917953491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.601477861404419},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5864263772964478},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5143786072731018},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.49522367119789124},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4828636944293976},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.46809840202331543},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.4487459063529968},{"id":"https://openalex.org/keywords/human-virome","display_name":"Human virome","score":0.4318680167198181},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4249628186225891},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4210087060928345},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35666611790657043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28643134236335754},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.155167818069458},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10944998264312744},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09372705221176147}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6889756917953491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.601477861404419},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5864263772964478},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5143786072731018},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.49522367119789124},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4828636944293976},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.46809840202331543},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.4487459063529968},{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.4318680167198181},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4249628186225891},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4210087060928345},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35666611790657043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28643134236335754},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.155167818069458},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10944998264312744},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09372705221176147},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000083422","descriptor_name":"Virome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000083422","descriptor_name":"Virome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000083422","descriptor_name":"Virome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s11517-023-02837-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11517-023-02837-8","pdf_url":null,"source":{"id":"https://openalex.org/S46300952","display_name":"Medical & Biological Engineering & Computing","issn_l":"0140-0118","issn":["0140-0118","1741-0444"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical &amp; Biological Engineering &amp; Computing","raw_type":"journal-article"},{"id":"pmid:37395885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37395885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical & biological engineering & computing","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1987971958","https://openalex.org/W2021210077","https://openalex.org/W2041391522","https://openalex.org/W2051224630","https://openalex.org/W2057000344","https://openalex.org/W2085487226","https://openalex.org/W2089468765","https://openalex.org/W2104846587","https://openalex.org/W2125266506","https://openalex.org/W2135046866","https://openalex.org/W2144560237","https://openalex.org/W2153187042","https://openalex.org/W2159954944","https://openalex.org/W2170960297","https://openalex.org/W2194172909","https://openalex.org/W2767318416","https://openalex.org/W2810326626","https://openalex.org/W2950150251","https://openalex.org/W2950572599","https://openalex.org/W2952045272","https://openalex.org/W2988240595","https://openalex.org/W3003217347","https://openalex.org/W3087224093","https://openalex.org/W3116324311","https://openalex.org/W3117679888","https://openalex.org/W3196141744","https://openalex.org/W3198971816","https://openalex.org/W3200242814","https://openalex.org/W3217347027","https://openalex.org/W4205247356","https://openalex.org/W4210644165","https://openalex.org/W4220693339"],"related_works":["https://openalex.org/W4297154044","https://openalex.org/W3213058918","https://openalex.org/W4377942519","https://openalex.org/W2751684444","https://openalex.org/W2345305039","https://openalex.org/W4319593308","https://openalex.org/W4280556370","https://openalex.org/W3010890513","https://openalex.org/W4220726286","https://openalex.org/W3138271675"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-01-24T23:23:39.755997","created_date":"2025-10-10T00:00:00"}
