{"id":"https://openalex.org/W4283793157","doi":"https://doi.org/10.1007/s11517-022-02599-9","title":"Sparse principal component analysis based on genome network for correcting cell type heterogeneity in epigenome-wide association studies","display_name":"Sparse principal component analysis based on genome network for correcting cell type heterogeneity in epigenome-wide association studies","publication_year":2022,"publication_date":"2022-07-04","ids":{"openalex":"https://openalex.org/W4283793157","doi":"https://doi.org/10.1007/s11517-022-02599-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/35789457"},"language":"en","primary_location":{"id":"doi:10.1007/s11517-022-02599-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11517-022-02599-9","pdf_url":null,"source":{"id":"https://openalex.org/S46300952","display_name":"Medical & Biological Engineering & Computing","issn_l":"0140-0118","issn":["0140-0118","1741-0444"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical &amp; Biological Engineering &amp; Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103104886","display_name":"Rui Miao","orcid":"https://orcid.org/0000-0001-5292-4377"},"institutions":[{"id":"https://openalex.org/I182386381","display_name":"Zunyi Medical University","ror":"https://ror.org/00g5b0g93","country_code":"CN","type":"education","lineage":["https://openalex.org/I182386381"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Miao","raw_affiliation_strings":["Basic Teaching Department, ZhuHai Campus of ZunYi Medical University, Zhu Hai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Basic Teaching Department, ZhuHai Campus of ZunYi Medical University, Zhu Hai, China","institution_ids":["https://openalex.org/I182386381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089738486","display_name":"Qi Dang","orcid":null},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Qi Dang","raw_affiliation_strings":["Institute of Systems Engineering, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China","Institute of Systems Engineering, Macau University of Science and Technology, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Systems Engineering, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China","institution_ids":["https://openalex.org/I111950717"]},{"raw_affiliation_string":"Institute of Systems Engineering, Macau University of Science and Technology, Macau, China","institution_ids":["https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079611154","display_name":"Jie Cai","orcid":"https://orcid.org/0000-0002-6561-5626"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Jie Cai","raw_affiliation_strings":["Institute of Systems Engineering, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China","Institute of Systems Engineering, Macau University of Science and Technology, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Systems Engineering, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China","institution_ids":["https://openalex.org/I111950717"]},{"raw_affiliation_string":"Institute of Systems Engineering, Macau University of Science and Technology, Macau, China","institution_ids":["https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040705853","display_name":"Haihui Huang","orcid":"https://orcid.org/0000-0002-6546-969X"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Hai-Hui Huang","raw_affiliation_strings":["Institute of Systems Engineering, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China","Institute of Systems Engineering, Macau University of Science and Technology, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Systems Engineering, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China","institution_ids":["https://openalex.org/I111950717"]},{"raw_affiliation_string":"Institute of Systems Engineering, Macau University of Science and Technology, Macau, China","institution_ids":["https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043262479","display_name":"Shengli Xie","orcid":"https://orcid.org/0000-0003-2041-5214"},"institutions":[{"id":"https://openalex.org/I4210107815","display_name":"Guangdong-Hongkong-Macau Joint Laboratory of Collaborative Innovation for Environmental Quality","ror":"https://ror.org/02gwsx029","country_code":"CN","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I159948400","https://openalex.org/I200769079","https://openalex.org/I4210107815","https://openalex.org/I4210144285","https://openalex.org/I4391767947"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng-Li Xie","raw_affiliation_strings":["Guangdong-HongKong-Macao Joint Laboratory for Smart Discrete Manufacturing, Guangzhou, 510006, China","Guangdong-HongKong-Macao Joint Laboratory for Smart Discrete Manufacturing, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangdong-HongKong-Macao Joint Laboratory for Smart Discrete Manufacturing, Guangzhou, 510006, China","institution_ids":["https://openalex.org/I4210107815"]},{"raw_affiliation_string":"Guangdong-HongKong-Macao Joint Laboratory for Smart Discrete Manufacturing, Guangzhou, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059383536","display_name":"Yong Liang","orcid":"https://orcid.org/0000-0003-2403-1971"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN","MO"],"is_corresponding":true,"raw_author_name":"Yong Liang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China. yliang@must.edu.mo","State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China. yliang@must.edu.mo","Peng Cheng Laboratory, Shenzhen, China","State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China. yliang@must.edu.mo","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China. yliang@must.edu.mo","institution_ids":[]},{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology, Macau, China","institution_ids":["https://openalex.org/I111950717"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059383536"],"corresponding_institution_ids":["https://openalex.org/I111950717","https://openalex.org/I4210136793"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06503122,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"60","issue":"9","first_page":"2601","last_page":"2618"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenome","display_name":"Epigenome","score":0.7949615120887756},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.7804805040359497},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5497617125511169},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5396374464035034},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.5066748261451721},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.4338315427303314},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.4315303862094879},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.427807092666626},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.4207671880722046},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38807910680770874},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3777058720588684},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.37601903080940247},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3583414554595947},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25279492139816284},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23735648393630981},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10496199131011963},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.08312749862670898},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08075234293937683}],"concepts":[{"id":"https://openalex.org/C117717151","wikidata":"https://www.wikidata.org/wiki/Q3589155","display_name":"Epigenome","level":5,"score":0.7949615120887756},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.7804805040359497},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5497617125511169},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5396374464035034},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.5066748261451721},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.4338315427303314},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.4315303862094879},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.427807092666626},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.4207671880722046},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38807910680770874},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3777058720588684},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.37601903080940247},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3583414554595947},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25279492139816284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23735648393630981},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10496199131011963},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.08312749862670898},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08075234293937683},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s11517-022-02599-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11517-022-02599-9","pdf_url":null,"source":{"id":"https://openalex.org/S46300952","display_name":"Medical & Biological Engineering & Computing","issn_l":"0140-0118","issn":["0140-0118","1741-0444"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical &amp; Biological Engineering &amp; Computing","raw_type":"journal-article"},{"id":"pmid:35789457","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35789457","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical & biological engineering & computing","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1963970354","https://openalex.org/W1967086152","https://openalex.org/W1973331597","https://openalex.org/W1984689638","https://openalex.org/W1985987855","https://openalex.org/W1988142188","https://openalex.org/W2008047653","https://openalex.org/W2011988545","https://openalex.org/W2033706929","https://openalex.org/W2044514479","https://openalex.org/W2050105063","https://openalex.org/W2069690130","https://openalex.org/W2085438924","https://openalex.org/W2087591041","https://openalex.org/W2102893853","https://openalex.org/W2108084801","https://openalex.org/W2119507177","https://openalex.org/W2123649031","https://openalex.org/W2125180026","https://openalex.org/W2130430382","https://openalex.org/W2130523009","https://openalex.org/W2144035153","https://openalex.org/W2151052080","https://openalex.org/W2169294950","https://openalex.org/W2169556367","https://openalex.org/W2170324063","https://openalex.org/W2281754639","https://openalex.org/W2295126179","https://openalex.org/W2309685155","https://openalex.org/W2345356016","https://openalex.org/W2347100089","https://openalex.org/W2521877993","https://openalex.org/W2586588530","https://openalex.org/W2759742634","https://openalex.org/W2790756470","https://openalex.org/W2800095782","https://openalex.org/W2888789718","https://openalex.org/W2892349665","https://openalex.org/W2898256996","https://openalex.org/W2942619232","https://openalex.org/W2950086703","https://openalex.org/W2950199861","https://openalex.org/W2951545629","https://openalex.org/W2981383249","https://openalex.org/W2989331091","https://openalex.org/W3105982350","https://openalex.org/W3114405416","https://openalex.org/W3134522622","https://openalex.org/W3214205643","https://openalex.org/W4206058739","https://openalex.org/W4210607039"],"related_works":["https://openalex.org/W2066467839","https://openalex.org/W2594299395","https://openalex.org/W2111842731","https://openalex.org/W2170506381","https://openalex.org/W2765794416","https://openalex.org/W2039666944","https://openalex.org/W1531630856","https://openalex.org/W2794350630","https://openalex.org/W2089097350","https://openalex.org/W1864400744"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
