{"id":"https://openalex.org/W1970085704","doi":"https://doi.org/10.1007/s11424-015-2156-y","title":"On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines","display_name":"On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines","publication_year":2015,"publication_date":"2015-01-12","ids":{"openalex":"https://openalex.org/W1970085704","doi":"https://doi.org/10.1007/s11424-015-2156-y","mag":"1970085704"},"language":"en","primary_location":{"id":"doi:10.1007/s11424-015-2156-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11424-015-2156-y","pdf_url":null,"source":{"id":"https://openalex.org/S45848134","display_name":"Journal of Systems Science and Complexity","issn_l":"1009-6124","issn":["1009-6124","1559-7067"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Systems Science and Complexity","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100388546","display_name":"Limin Li","orcid":"https://orcid.org/0000-0003-3572-6832"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Limin Li","raw_affiliation_strings":["Institute of Information and System Science, Xi\u2019an Jiaotong University, Xi\u2019an, 710049, China","Xi'an Jiaotong University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information and System Science, Xi\u2019an Jiaotong University, Xi\u2019an, 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi'an Jiaotong University","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042790078","display_name":"Kiyoko F. Aoki\u2010Kinoshita","orcid":"https://orcid.org/0000-0002-6662-8015"},"institutions":[{"id":"https://openalex.org/I4210088637","display_name":"Soka University","ror":"https://ror.org/003qdfg20","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210088637"]},{"id":"https://openalex.org/I67607428","display_name":"Soka University of America","ror":"https://ror.org/03rr7xb36","country_code":"US","type":"education","lineage":["https://openalex.org/I67607428"]}],"countries":["JP","US"],"is_corresponding":false,"raw_author_name":"Kiyoko F. Aoki-Kinoshita","raw_affiliation_strings":["Department of Bioinformatics, Faculty of Engineering, Soka University, Tokyo, Japan","Soka University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Faculty of Engineering, Soka University, Tokyo, Japan","institution_ids":["https://openalex.org/I4210088637"]},{"raw_affiliation_string":"Soka University","institution_ids":["https://openalex.org/I67607428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086061723","display_name":"Wai\u2010Ki Ching","orcid":"https://orcid.org/0000-0002-5785-3210"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wai-Ki Ching","raw_affiliation_strings":["Advanced Modeling and Applied Computing Laboratory, Department of Mathematics, The University of Hong Kong, Pokfulam Road, Hong Kong, China","The University of Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Modeling and Applied Computing Laboratory, Department of Mathematics, The University of Hong Kong, Pokfulam Road, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"The University of Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100712102","display_name":"Hao Jiang","orcid":"https://orcid.org/0000-0001-5891-6044"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao Jiang","raw_affiliation_strings":["Department of Mathematics, School of Information, Renmin University of China, Beijing, 100872, China","Renmin university of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, School of Information, Renmin University of China, Beijing, 100872, China","institution_ids":["https://openalex.org/I78988378"]},{"raw_affiliation_string":"Renmin university of China","institution_ids":["https://openalex.org/I78988378"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100712102"],"corresponding_institution_ids":["https://openalex.org/I78988378"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03468528,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"28","issue":"2","first_page":"504","last_page":"516"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.7644193172454834},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.7422137260437012},{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.7417114973068237},{"id":"https://openalex.org/keywords/string-kernel","display_name":"String kernel","score":0.6389178037643433},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6310753226280212},{"id":"https://openalex.org/keywords/spectrum","display_name":"Spectrum (functional analysis)","score":0.48705199360847473},{"id":"https://openalex.org/keywords/substructure","display_name":"Substructure","score":0.46693745255470276},{"id":"https://openalex.org/keywords/kernel-method","display_name":"Kernel method","score":0.455092191696167},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.44109266996383667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4233455955982208},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.4151160418987274},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.39398735761642456},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3391655683517456},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3217775225639343},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28676164150238037},{"id":"https://openalex.org/keywords/radial-basis-function-kernel","display_name":"Radial basis function kernel","score":0.28198450803756714},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25940456986427307},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24742460250854492},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21306395530700684},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1521490514278412},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1046518087387085},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.09567457437515259},{"id":"https://openalex.org/keywords/glycoprotein","display_name":"Glycoprotein","score":0.06854292750358582}],"concepts":[{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.7644193172454834},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.7422137260437012},{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.7417114973068237},{"id":"https://openalex.org/C55851704","wikidata":"https://www.wikidata.org/wiki/Q7623983","display_name":"String kernel","level":5,"score":0.6389178037643433},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6310753226280212},{"id":"https://openalex.org/C156778621","wikidata":"https://www.wikidata.org/wiki/Q1365748","display_name":"Spectrum (functional analysis)","level":2,"score":0.48705199360847473},{"id":"https://openalex.org/C99679407","wikidata":"https://www.wikidata.org/wiki/Q56761637","display_name":"Substructure","level":2,"score":0.46693745255470276},{"id":"https://openalex.org/C122280245","wikidata":"https://www.wikidata.org/wiki/Q620622","display_name":"Kernel method","level":3,"score":0.455092191696167},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.44109266996383667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4233455955982208},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.4151160418987274},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.39398735761642456},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3391655683517456},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3217775225639343},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28676164150238037},{"id":"https://openalex.org/C75866337","wikidata":"https://www.wikidata.org/wiki/Q7280263","display_name":"Radial basis function kernel","level":4,"score":0.28198450803756714},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25940456986427307},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24742460250854492},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21306395530700684},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1521490514278412},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1046518087387085},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.09567457437515259},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.06854292750358582},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s11424-015-2156-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11424-015-2156-y","pdf_url":null,"source":{"id":"https://openalex.org/S45848134","display_name":"Journal of Systems Science and Complexity","issn_l":"1009-6124","issn":["1009-6124","1559-7067"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Systems Science and Complexity","raw_type":"journal-article"},{"id":"pmh:oai:hub.hku.hk:10722/217067","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/217067","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W740415","https://openalex.org/W1542652324","https://openalex.org/W1820870565","https://openalex.org/W1964940342","https://openalex.org/W1966891312","https://openalex.org/W1984122079","https://openalex.org/W1986532736","https://openalex.org/W2014731953","https://openalex.org/W2016891208","https://openalex.org/W2020816856","https://openalex.org/W2028589636","https://openalex.org/W2064105919","https://openalex.org/W2076975212","https://openalex.org/W2086331226","https://openalex.org/W2088065111","https://openalex.org/W2095573931","https://openalex.org/W2095780288","https://openalex.org/W2098964872","https://openalex.org/W2101908398","https://openalex.org/W2104139298","https://openalex.org/W2104827070","https://openalex.org/W2107595196","https://openalex.org/W2117672117","https://openalex.org/W2119821739","https://openalex.org/W2125558238","https://openalex.org/W2134491728","https://openalex.org/W2149514931","https://openalex.org/W2151949149","https://openalex.org/W2156909104","https://openalex.org/W2163203700","https://openalex.org/W2165674132","https://openalex.org/W2170960297","https://openalex.org/W2177769495","https://openalex.org/W2798766386","https://openalex.org/W3023786531","https://openalex.org/W3188069612","https://openalex.org/W4207004117","https://openalex.org/W4213345021","https://openalex.org/W4230700359","https://openalex.org/W4243428639","https://openalex.org/W4285719527","https://openalex.org/W4396738453"],"related_works":["https://openalex.org/W152351265","https://openalex.org/W3042295250","https://openalex.org/W4206904133","https://openalex.org/W1975708617","https://openalex.org/W3013206934","https://openalex.org/W2020816856","https://openalex.org/W1984421104","https://openalex.org/W1835000624","https://openalex.org/W2958374823","https://openalex.org/W2535206775"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
