{"id":"https://openalex.org/W2033784106","doi":"https://doi.org/10.1007/s11390-010-9307-3","title":"Understanding the \u201cHorizontal Dimension\u201d of Molecular Evolution to Annotate, Classify, and Discover Proteins with Functional Domains","display_name":"Understanding the \u201cHorizontal Dimension\u201d of Molecular Evolution to Annotate, Classify, and Discover Proteins with Functional Domains","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2033784106","doi":"https://doi.org/10.1007/s11390-010-9307-3","mag":"2033784106"},"language":"en","primary_location":{"id":"doi:10.1007/s11390-010-9307-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-010-9307-3","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014574127","display_name":"Gloria Rendon","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Gloria Rendon","raw_affiliation_strings":["Fellow, APS,\n        Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","Fellow, APS,\n        National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Fellow, APS,\n        Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Fellow, APS,\n        National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000980399","display_name":"Mao-Feng Ger","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mao-Feng Ger","raw_affiliation_strings":["Fellow, APS,\n        Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","Fellow, APS,\n        Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Fellow, APS,\n        Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Fellow, APS,\n        Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087139151","display_name":"Ruth Kantorovitz","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruth Kantorovitz","raw_affiliation_strings":["Department of Mathematics, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","Fellow, APS,\n        National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Fellow, APS,\n        National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031999479","display_name":"Shreedhar Natarajan","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shreedhar Natarajan","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, U.S.A","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031569253","display_name":"Jeffrey L. Tilson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jeffrey Tilson","raw_affiliation_strings":["Renaissance Computing Institute, Chapel Hill, North Carolina, 27517, U.S.A"],"affiliations":[{"raw_affiliation_string":"Renaissance Computing Institute, Chapel Hill, North Carolina, 27517, U.S.A","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062408256","display_name":"Eric Jakobsson","orcid":"https://orcid.org/0000-0002-7892-5295"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric Jakobsson","raw_affiliation_strings":["Fellow, APS,\n        Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","Fellow, APS,\n        Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","Fellow, APS,\n        National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Fellow, APS,\n        Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Fellow, APS,\n        Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Fellow, APS,\n        National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5014574127"],"corresponding_institution_ids":[],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09771495,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"1","first_page":"82","last_page":"94"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6662340760231018},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6301202774047852},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.566766619682312},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5467944145202637},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5071685314178467},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47522667050361633},{"id":"https://openalex.org/keywords/protein-evolution","display_name":"Protein evolution","score":0.4462265074253082},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4354564845561981},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4276989996433258},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3385833203792572},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.304494708776474},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2100776731967926},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16525709629058838},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.11080193519592285}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6662340760231018},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6301202774047852},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.566766619682312},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5467944145202637},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5071685314178467},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47522667050361633},{"id":"https://openalex.org/C2992240565","wikidata":"https://www.wikidata.org/wiki/Q856529","display_name":"Protein evolution","level":3,"score":0.4462265074253082},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4354564845561981},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4276989996433258},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3385833203792572},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.304494708776474},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2100776731967926},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16525709629058838},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.11080193519592285},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11390-010-9307-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-010-9307-3","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.46000000834465027,"display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W626692","https://openalex.org/W1214546200","https://openalex.org/W1963646848","https://openalex.org/W1966421023","https://openalex.org/W1982481323","https://openalex.org/W1986512768","https://openalex.org/W1988422871","https://openalex.org/W1990056477","https://openalex.org/W1994025789","https://openalex.org/W2016839209","https://openalex.org/W2024197751","https://openalex.org/W2037827026","https://openalex.org/W2042240161","https://openalex.org/W2045131140","https://openalex.org/W2050284387","https://openalex.org/W2051572912","https://openalex.org/W2056002855","https://openalex.org/W2059230624","https://openalex.org/W2065711903","https://openalex.org/W2065970966","https://openalex.org/W2076724084","https://openalex.org/W2080922074","https://openalex.org/W2098386120","https://openalex.org/W2099047355","https://openalex.org/W2099182237","https://openalex.org/W2099946731","https://openalex.org/W2101330776","https://openalex.org/W2103017472","https://openalex.org/W2103476645","https://openalex.org/W2105869636","https://openalex.org/W2107811186","https://openalex.org/W2109872885","https://openalex.org/W2110680515","https://openalex.org/W2111373249","https://openalex.org/W2112792893","https://openalex.org/W2115979107","https://openalex.org/W2116423958","https://openalex.org/W2117035344","https://openalex.org/W2118619377","https://openalex.org/W2122613768","https://openalex.org/W2124285343","https://openalex.org/W2131094547","https://openalex.org/W2131510173","https://openalex.org/W2131924932","https://openalex.org/W2134591904","https://openalex.org/W2135221645","https://openalex.org/W2138345179","https://openalex.org/W2141408320","https://openalex.org/W2141885858","https://openalex.org/W2143592941","https://openalex.org/W2144944670","https://openalex.org/W2145427519","https://openalex.org/W2148877470","https://openalex.org/W2150196682","https://openalex.org/W2153577994","https://openalex.org/W2155606054","https://openalex.org/W2155717510","https://openalex.org/W2157009395","https://openalex.org/W2161033884","https://openalex.org/W2161062388","https://openalex.org/W2161421500","https://openalex.org/W2162742404","https://openalex.org/W2163105490","https://openalex.org/W2163181687","https://openalex.org/W2168103533","https://openalex.org/W2168223461","https://openalex.org/W2168549338","https://openalex.org/W2170241526","https://openalex.org/W4210400672","https://openalex.org/W4237572013","https://openalex.org/W6673424395","https://openalex.org/W6674633187"],"related_works":["https://openalex.org/W2169315304","https://openalex.org/W2499073244","https://openalex.org/W3197405877","https://openalex.org/W2118652015","https://openalex.org/W4213112444","https://openalex.org/W1987583739","https://openalex.org/W2029370147","https://openalex.org/W2030786927","https://openalex.org/W2116160060","https://openalex.org/W2405335529"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
