{"id":"https://openalex.org/W1999113425","doi":"https://doi.org/10.1007/s11390-010-9306-4","title":"Metagenomics: Facts and Artifacts, and Computational Challenges","display_name":"Metagenomics: Facts and Artifacts, and Computational Challenges","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W1999113425","doi":"https://doi.org/10.1007/s11390-010-9306-4","mag":"1999113425","pmid":"https://pubmed.ncbi.nlm.nih.gov/20648230"},"language":"en","primary_location":{"id":"doi:10.1007/s11390-010-9306-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-010-9306-4","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905821","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113578406","display_name":"John Wooley","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John C. Wooley","raw_affiliation_strings":["Center for Research on BioSystems, Calit2, UC San Diego, La Jolla CA 92093","University of Califormia San Diego"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Research on BioSystems, Calit2, UC San Diego, La Jolla CA 92093","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of Califormia San Diego","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082620694","display_name":"Yuzhen Ye","orcid":"https://orcid.org/0000-0003-3707-3185"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuzhen Ye","raw_affiliation_strings":["School of Informatics and Computing, Indiana University, Bloomington, Indiana, 47408, U.S.A","\u2021Indiana University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University, Bloomington, Indiana, 47408, U.S.A","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"\u2021Indiana University","institution_ids":["https://openalex.org/I592451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5113578406"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":5.8549,"has_fulltext":false,"cited_by_count":185,"citation_normalized_percentile":{"value":0.96932915,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"25","issue":"1","first_page":"71","last_page":"81"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9739661812782288},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6677446365356445},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6200268268585205},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.5212212800979614},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4520331919193268},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3474867343902588},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3007977604866028},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27762389183044434}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9739661812782288},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6677446365356445},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6200268268585205},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.5212212800979614},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4520331919193268},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3474867343902588},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3007977604866028},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27762389183044434},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s11390-010-9306-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-010-9306-4","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},{"id":"pmid:20648230","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20648230","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer science and technology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2905821","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905821","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Sci Technol","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2905821","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905821","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Sci Technol","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7200000286102295,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":92,"referenced_works":["https://openalex.org/W1539550196","https://openalex.org/W1560556066","https://openalex.org/W1562379206","https://openalex.org/W1791999417","https://openalex.org/W1832083778","https://openalex.org/W1838357706","https://openalex.org/W1939138306","https://openalex.org/W1966711026","https://openalex.org/W1968957319","https://openalex.org/W1969295076","https://openalex.org/W1969435169","https://openalex.org/W1978647329","https://openalex.org/W1989348205","https://openalex.org/W1995393174","https://openalex.org/W1998077837","https://openalex.org/W1998601670","https://openalex.org/W2001031283","https://openalex.org/W2003773835","https://openalex.org/W2007945994","https://openalex.org/W2016999705","https://openalex.org/W2021497754","https://openalex.org/W2023829651","https://openalex.org/W2023911006","https://openalex.org/W2033705779","https://openalex.org/W2035779227","https://openalex.org/W2037532428","https://openalex.org/W2042893247","https://openalex.org/W2046726549","https://openalex.org/W2047341547","https://openalex.org/W2051322058","https://openalex.org/W2051357191","https://openalex.org/W2055503200","https://openalex.org/W2056930789","https://openalex.org/W2060884781","https://openalex.org/W2061559511","https://openalex.org/W2073548709","https://openalex.org/W2075623226","https://openalex.org/W2075716829","https://openalex.org/W2077631777","https://openalex.org/W2078969200","https://openalex.org/W2079706758","https://openalex.org/W2080945313","https://openalex.org/W2093830129","https://openalex.org/W2095006983","https://openalex.org/W2098023550","https://openalex.org/W2099006507","https://openalex.org/W2102118387","https://openalex.org/W2104488618","https://openalex.org/W2106651224","https://openalex.org/W2107000647","https://openalex.org/W2107974372","https://openalex.org/W2108211735","https://openalex.org/W2109391327","https://openalex.org/W2113601822","https://openalex.org/W2114034054","https://openalex.org/W2114133992","https://openalex.org/W2114548104","https://openalex.org/W2116895571","https://openalex.org/W2118040479","https://openalex.org/W2124637227","https://openalex.org/W2126627383","https://openalex.org/W2126809954","https://openalex.org/W2130595050","https://openalex.org/W2131186249","https://openalex.org/W2131342905","https://openalex.org/W2133319541","https://openalex.org/W2133500149","https://openalex.org/W2135435176","https://openalex.org/W2136280642","https://openalex.org/W2139436782","https://openalex.org/W2140604849","https://openalex.org/W2140960177","https://openalex.org/W2142749416","https://openalex.org/W2144568881","https://openalex.org/W2148525391","https://openalex.org/W2149573313","https://openalex.org/W2151017710","https://openalex.org/W2153990926","https://openalex.org/W2156701707","https://openalex.org/W2158421363","https://openalex.org/W2159406441","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2162315106","https://openalex.org/W2166323125","https://openalex.org/W2167062509","https://openalex.org/W2169382386","https://openalex.org/W2169762780","https://openalex.org/W2170024099","https://openalex.org/W2170052798","https://openalex.org/W2175093233","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2474302342","https://openalex.org/W1910109602","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2080583581","https://openalex.org/W3158976456","https://openalex.org/W4285082713","https://openalex.org/W2102118387","https://openalex.org/W3195915274"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":11}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}