{"id":"https://openalex.org/W2023491987","doi":"https://doi.org/10.1007/s11390-010-9300-x","title":"New Generations: Sequencing Machines and Their Computational Challenges","display_name":"New Generations: Sequencing Machines and Their Computational Challenges","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2023491987","doi":"https://doi.org/10.1007/s11390-010-9300-x","mag":"2023491987","pmid":"https://pubmed.ncbi.nlm.nih.gov/22121326"},"language":"en","primary_location":{"id":"doi:10.1007/s11390-010-9300-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-010-9300-x","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041081509","display_name":"David C. Schwartz","orcid":"https://orcid.org/0000-0002-4726-3241"},"institutions":[{"id":"https://openalex.org/I1304256225","display_name":"University of Wisconsin System","ror":"https://ror.org/03ydkyb10","country_code":"US","type":"education","lineage":["https://openalex.org/I1304256225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David C. Schwartz","raw_affiliation_strings":["Laboratory for Molecular and Computational Genomics, Department of Chemistry and Laboratory of Genetics, University of Wisconsin-Madison, WI 53706 USA","University of Wisconsin\u2013Madiso"],"affiliations":[{"raw_affiliation_string":"Laboratory for Molecular and Computational Genomics, Department of Chemistry and Laboratory of Genetics, University of Wisconsin-Madison, WI 53706 USA","institution_ids":[]},{"raw_affiliation_string":"University of Wisconsin\u2013Madiso","institution_ids":["https://openalex.org/I1304256225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105360062","display_name":"Michael S. Waterman","orcid":null},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]},{"id":"https://openalex.org/I2800817003","display_name":"Southern California University for Professional Studies","ror":"https://ror.org/058zz0t50","country_code":"US","type":"education","lineage":["https://openalex.org/I2800817003"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Michael S. Waterman","raw_affiliation_strings":["Department of Automation, Tsinghua University, Beijing, 100084, China","Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, U.S.A","University of Southern California","Tsinghua University"],"affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, U.S.A","institution_ids":[]},{"raw_affiliation_string":"University of Southern California","institution_ids":["https://openalex.org/I2800817003","https://openalex.org/I1174212"]},{"raw_affiliation_string":"Tsinghua University","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041081509"],"corresponding_institution_ids":["https://openalex.org/I1304256225"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":1.3554,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.79357684,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"25","issue":"1","first_page":"3","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7546311616897583},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5901168584823608},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4995579719543457},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49244627356529236},{"id":"https://openalex.org/keywords/explosive-material","display_name":"Explosive material","score":0.46806302666664124},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4669564664363861},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4207843840122223},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15768757462501526},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.10031455755233765}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7546311616897583},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5901168584823608},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4995579719543457},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49244627356529236},{"id":"https://openalex.org/C154238967","wikidata":"https://www.wikidata.org/wiki/Q12870","display_name":"Explosive material","level":2,"score":0.46806302666664124},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4669564664363861},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4207843840122223},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15768757462501526},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.10031455755233765},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/s11390-010-9300-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-010-9300-x","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},{"id":"pmid:22121326","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22121326","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer science and technology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.372.8248","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.372.8248","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cmb.usc.edu/papers/msw_papers/msw-173.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2222820","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3222932","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308668","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W166360991","https://openalex.org/W1492565411","https://openalex.org/W1544644664","https://openalex.org/W1600463518","https://openalex.org/W1605467373","https://openalex.org/W1658221551","https://openalex.org/W1966972080","https://openalex.org/W1970939265","https://openalex.org/W1974646727","https://openalex.org/W1984236772","https://openalex.org/W1994057432","https://openalex.org/W1999660860","https://openalex.org/W2000597943","https://openalex.org/W2013563870","https://openalex.org/W2015028046","https://openalex.org/W2016848076","https://openalex.org/W2022603493","https://openalex.org/W2022910024","https://openalex.org/W2025583382","https://openalex.org/W2036145579","https://openalex.org/W2042026038","https://openalex.org/W2049771534","https://openalex.org/W2051815061","https://openalex.org/W2055480595","https://openalex.org/W2062900575","https://openalex.org/W2065587065","https://openalex.org/W2067466498","https://openalex.org/W2070985991","https://openalex.org/W2080921667","https://openalex.org/W2099570444","https://openalex.org/W2107233609","https://openalex.org/W2108058966","https://openalex.org/W2113947632","https://openalex.org/W2115872073","https://openalex.org/W2120335901","https://openalex.org/W2120892748","https://openalex.org/W2127230663","https://openalex.org/W2127407003","https://openalex.org/W2131852975","https://openalex.org/W2132341951","https://openalex.org/W2136651963","https://openalex.org/W2151017710","https://openalex.org/W2155845142","https://openalex.org/W2156104322","https://openalex.org/W2160969485","https://openalex.org/W2162370352","https://openalex.org/W2168909179","https://openalex.org/W6678791002"],"related_works":["https://openalex.org/W2287334727","https://openalex.org/W1488588773","https://openalex.org/W2048510477","https://openalex.org/W2762476777","https://openalex.org/W2600150541","https://openalex.org/W2347510524","https://openalex.org/W2392989627","https://openalex.org/W1977665047","https://openalex.org/W2109849884","https://openalex.org/W2762130752"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
