{"id":"https://openalex.org/W2018543102","doi":"https://doi.org/10.1007/s11390-006-0973-0","title":"Improvement of Performance of MegaBlast Algorithm for DNA Sequence Alignment","display_name":"Improvement of Performance of MegaBlast Algorithm for DNA Sequence Alignment","publication_year":2006,"publication_date":"2006-11-01","ids":{"openalex":"https://openalex.org/W2018543102","doi":"https://doi.org/10.1007/s11390-006-0973-0","mag":"2018543102"},"language":"en","primary_location":{"id":"doi:10.1007/s11390-006-0973-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-006-0973-0","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104072170","display_name":"Guangming Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guang-Ming Tan","raw_affiliation_strings":["Graduate University of Chinese Academy of Sciences, Beijing, 100039, P.R. China","Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","Graduate University of Chinese Academy of Sciences, Beijing, P.R. China","Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences, Beijing, 100039, P.R. China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences, Beijing, P.R. China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045330783","display_name":"Lin Xu","orcid":"https://orcid.org/0000-0003-2602-9875"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Xu","raw_affiliation_strings":["Graduate University of Chinese Academy of Sciences, Beijing, 100039, P.R. China","Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","Graduate University of Chinese Academy of Sciences, Beijing, P.R. China","Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences, Beijing, 100039, P.R. China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences, Beijing, P.R. China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076729236","display_name":"Dongbo Bu","orcid":"https://orcid.org/0000-0003-4119-4238"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong-Bo Bu","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101952645","display_name":"Shengzhong Feng","orcid":"https://orcid.org/0000-0002-6225-2815"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng-Zhong Feng","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101738013","display_name":"Ninghui Sun","orcid":"https://orcid.org/0000-0002-1953-1392"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning-Hui Sun","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, 100080, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences, Beijing, P.R. China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5104072170"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176","https://openalex.org/I4210165038"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.08038434,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"21","issue":"6","first_page":"973","last_page":"978"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8922570943832397},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6632777452468872},{"id":"https://openalex.org/keywords/hash-table","display_name":"Hash table","score":0.6346063613891602},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5972869992256165},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5685845017433167},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5653772354125977},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5429534316062927},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.5306799411773682},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5299946665763855},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.518541157245636},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4646793007850647},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.42228826880455017},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.4149729609489441},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.34809091687202454},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32811954617500305},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2404724657535553},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11694642901420593}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8922570943832397},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6632777452468872},{"id":"https://openalex.org/C67388219","wikidata":"https://www.wikidata.org/wiki/Q207440","display_name":"Hash table","level":3,"score":0.6346063613891602},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5972869992256165},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5685845017433167},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5653772354125977},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5429534316062927},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.5306799411773682},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5299946665763855},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.518541157245636},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4646793007850647},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.42228826880455017},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.4149729609489441},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.34809091687202454},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32811954617500305},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2404724657535553},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11694642901420593},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11390-006-0973-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-006-0973-0","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W145805655","https://openalex.org/W1529802779","https://openalex.org/W1990061958","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2087064593","https://openalex.org/W2089499735","https://openalex.org/W2140598222","https://openalex.org/W2156137607","https://openalex.org/W2320748401"],"related_works":["https://openalex.org/W1835589799","https://openalex.org/W2144265691","https://openalex.org/W2004215917","https://openalex.org/W2948014085","https://openalex.org/W1974956921","https://openalex.org/W1605991620","https://openalex.org/W4387251676","https://openalex.org/W2139695554","https://openalex.org/W4385261619","https://openalex.org/W2103737249"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
