{"id":"https://openalex.org/W2079036627","doi":"https://doi.org/10.1007/s11390-005-0454-x","title":"RNA Structural Homology Search with a Succinct Stochastic Grammar Model","display_name":"RNA Structural Homology Search with a Succinct Stochastic Grammar Model","publication_year":2005,"publication_date":"2005-07-01","ids":{"openalex":"https://openalex.org/W2079036627","doi":"https://doi.org/10.1007/s11390-005-0454-x","mag":"2079036627"},"language":"en","primary_location":{"id":"doi:10.1007/s11390-005-0454-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-005-0454-x","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017041136","display_name":"Yinglei Song","orcid":"https://orcid.org/0000-0003-3982-7657"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ying-Lei Song","raw_affiliation_strings":["Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","Department of Computer Science, University of Georgia, Athens, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, U.S.A","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076081661","display_name":"Jizhen Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ji-Zhen Zhao","raw_affiliation_strings":["Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","Department of Computer Science, University of Georgia, Athens, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, U.S.A","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115590267","display_name":"Chunmei Liu","orcid":"https://orcid.org/0000-0001-9560-3709"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chun-Mei Liu","raw_affiliation_strings":["Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","Department of Computer Science, University of Georgia, Athens, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, U.S.A","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085011918","display_name":"Kan Liu","orcid":"https://orcid.org/0000-0002-3167-1718"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kan Liu","raw_affiliation_strings":["Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","Department of Computer Science, University of Georgia, Athens, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, U.S.A","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081591724","display_name":"Russell L. Malmberg","orcid":"https://orcid.org/0000-0002-7448-5034"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I4210095419","display_name":"Carnegie Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Malmberg","raw_affiliation_strings":["Department of Plant Biology, University of Georgia, Athens, GA30602, U.S.A","Department of Plant Biology, University of Georgia, Athens, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Plant Biology, University of Georgia, Athens, GA30602, U.S.A","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Plant Biology, University of Georgia, Athens, U.S.A","institution_ids":["https://openalex.org/I4210095419","https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012513857","display_name":"Liming Cai","orcid":"https://orcid.org/0000-0002-8982-2435"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Li-Ming Cai","raw_affiliation_strings":["Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","Department of Computer Science, University of Georgia, Athens, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, GA30602, U.S.A","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, U.S.A","institution_ids":["https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5017041136"],"corresponding_institution_ids":["https://openalex.org/I165733156"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.2517,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.55944927,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"20","issue":"4","first_page":"454","last_page":"464"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7145189046859741},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.6895326375961304},{"id":"https://openalex.org/keywords/context-free-grammar","display_name":"Context-free grammar","score":0.5661651492118835},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5278584361076355},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.525754988193512},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.5088151097297668},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.50338214635849},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.44491448998451233},{"id":"https://openalex.org/keywords/stochastic-context-free-grammar","display_name":"Stochastic context-free grammar","score":0.44461965560913086},{"id":"https://openalex.org/keywords/rule-based-machine-translation","display_name":"Rule-based machine translation","score":0.440306156873703},{"id":"https://openalex.org/keywords/grammar","display_name":"Grammar","score":0.4333174526691437},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4310833811759949},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.41064274311065674},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3648737072944641},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3188019394874573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30219176411628723},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2525221109390259},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2059077024459839},{"id":"https://openalex.org/keywords/tree-adjoining-grammar","display_name":"Tree-adjoining grammar","score":0.20551535487174988},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16981792449951172}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7145189046859741},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.6895326375961304},{"id":"https://openalex.org/C97212296","wikidata":"https://www.wikidata.org/wiki/Q338047","display_name":"Context-free grammar","level":3,"score":0.5661651492118835},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5278584361076355},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.525754988193512},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.5088151097297668},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.50338214635849},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.44491448998451233},{"id":"https://openalex.org/C199624470","wikidata":"https://www.wikidata.org/wiki/Q2377216","display_name":"Stochastic context-free grammar","level":5,"score":0.44461965560913086},{"id":"https://openalex.org/C53893814","wikidata":"https://www.wikidata.org/wiki/Q7378909","display_name":"Rule-based machine translation","level":2,"score":0.440306156873703},{"id":"https://openalex.org/C26022165","wikidata":"https://www.wikidata.org/wiki/Q8091","display_name":"Grammar","level":2,"score":0.4333174526691437},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4310833811759949},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.41064274311065674},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3648737072944641},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3188019394874573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30219176411628723},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2525221109390259},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2059077024459839},{"id":"https://openalex.org/C134083981","wikidata":"https://www.wikidata.org/wiki/Q1754022","display_name":"Tree-adjoining grammar","level":4,"score":0.20551535487174988},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16981792449951172},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11390-005-0454-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11390-005-0454-x","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1523895109","https://openalex.org/W1542426682","https://openalex.org/W1822105579","https://openalex.org/W1861164398","https://openalex.org/W1950410402","https://openalex.org/W1981777358","https://openalex.org/W1987502048","https://openalex.org/W2009570821","https://openalex.org/W2011368877","https://openalex.org/W2020021066","https://openalex.org/W2023206235","https://openalex.org/W2045895660","https://openalex.org/W2076756368","https://openalex.org/W2088010977","https://openalex.org/W2088938573","https://openalex.org/W2102066220","https://openalex.org/W2149429041","https://openalex.org/W2158381555","https://openalex.org/W2159299470","https://openalex.org/W2167673850","https://openalex.org/W2169105524","https://openalex.org/W2170434236","https://openalex.org/W2398951942","https://openalex.org/W4234879553","https://openalex.org/W4234887284","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W1558874415","https://openalex.org/W2058948626","https://openalex.org/W2010532332","https://openalex.org/W1528741793","https://openalex.org/W2413926952","https://openalex.org/W2187766366","https://openalex.org/W2122623226","https://openalex.org/W2377282964","https://openalex.org/W4302481511","https://openalex.org/W2573171981"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
