{"id":"https://openalex.org/W4395037556","doi":"https://doi.org/10.1007/s11280-024-01268-1","title":"OntoMedRec: Logically-pretrained model-agnostic ontology encoders for medication recommendation","display_name":"OntoMedRec: Logically-pretrained model-agnostic ontology encoders for medication recommendation","publication_year":2024,"publication_date":"2024-04-23","ids":{"openalex":"https://openalex.org/W4395037556","doi":"https://doi.org/10.1007/s11280-024-01268-1"},"language":"en","primary_location":{"id":"doi:10.1007/s11280-024-01268-1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11280-024-01268-1","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11280-024-01268-1.pdf","source":{"id":"https://openalex.org/S129236917","display_name":"World Wide Web","issn_l":"1386-145X","issn":["1386-145X","1573-1413"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"World Wide Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s11280-024-01268-1.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005137054","display_name":"Weicong Tan","orcid":"https://orcid.org/0000-0001-7634-7535"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Weicong Tan","raw_affiliation_strings":["Faculty of Information Technology, Monash University, Victoria, 3800, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Monash University, Victoria, 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100372965","display_name":"Weiqing Wang","orcid":"https://orcid.org/0000-0002-9578-819X"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Weiqing Wang","raw_affiliation_strings":["Faculty of Information Technology, Monash University, Victoria, 3800, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Monash University, Victoria, 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101881627","display_name":"Xin Zhou","orcid":"https://orcid.org/0000-0001-6782-9313"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Xin Zhou","raw_affiliation_strings":["Faculty of Information Technology, Monash University, Victoria, 3800, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Monash University, Victoria, 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005792924","display_name":"Wray Buntine","orcid":"https://orcid.org/0000-0001-9292-1015"},"institutions":[{"id":"https://openalex.org/I4210142044","display_name":"VinUniversity","ror":"https://ror.org/052dmdr17","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210142044"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Wray Buntine","raw_affiliation_strings":["College of Engineering and Computer Science, VinUniversity, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Engineering and Computer Science, VinUniversity, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210142044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076136083","display_name":"Gordon Bingham","orcid":"https://orcid.org/0000-0002-3440-1289"},"institutions":[{"id":"https://openalex.org/I4210163178","display_name":"Alfred Health","ror":"https://ror.org/04scfb908","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210163178"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Gordon Bingham","raw_affiliation_strings":["Nursing Services, Alfred Health, Melbourne, Victoria, 3004, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nursing Services, Alfred Health, Melbourne, Victoria, 3004, Australia","institution_ids":["https://openalex.org/I4210163178"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088492734","display_name":"Hongzhi Yin","orcid":"https://orcid.org/0000-0003-1395-261X"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Hongzhi Yin","raw_affiliation_strings":["Faculty of Engineering, The University of Queensland, Brisbane, Queensland, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, The University of Queensland, Brisbane, Queensland, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100372965"],"corresponding_institution_ids":["https://openalex.org/I56590836"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":1.1275,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.80216103,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8979721665382385},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7170230746269226},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.5872040390968323},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4794268012046814},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.46707892417907715},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3887923061847687}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8979721665382385},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7170230746269226},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.5872040390968323},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4794268012046814},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.46707892417907715},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3887923061847687},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s11280-024-01268-1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11280-024-01268-1","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11280-024-01268-1.pdf","source":{"id":"https://openalex.org/S129236917","display_name":"World Wide Web","issn_l":"1386-145X","issn":["1386-145X","1573-1413"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"World Wide Web","raw_type":"journal-article"},{"id":"pmh:oai:monash.edu:openaire/42c62330-3e23-4662-8ed1-77cf74dd38eb","is_oa":true,"landing_page_url":"https://research.monash.edu/en/publications/42c62330-3e23-4662-8ed1-77cf74dd38eb","pdf_url":"https://researchmgt.monash.edu/ws/files/593290270/589500646_oa.pdf","source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Tan, W, Wang, W, Zhou, X, Buntine, W, Bingham, G & Yin, H 2024, 'OntoMedRec : Logically-pretrained model-agnostic ontology encoders for medication recommendation', World Wide Web, vol. 27, no. 3, 28. https://doi.org/10.1007/s11280-024-01268-1","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:monash.edu:publications/42c62330-3e23-4662-8ed1-77cf74dd38eb","is_oa":true,"landing_page_url":"http://www.scopus.com/inward/record.url?scp=85191099578&partnerID=8YFLogxK","pdf_url":"https://researchmgt.monash.edu/ws/files/593290270/589500646_oa.pdf","source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Tan, W, Wang, W, Zhou, X, Buntine, W, Bingham, G & Yin, H 2024, 'OntoMedRec : Logically-pretrained model-agnostic ontology encoders for medication recommendation', World Wide Web, vol. 27, no. 3, 28. https://doi.org/10.1007/s11280-024-01268-1","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1007/s11280-024-01268-1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11280-024-01268-1","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11280-024-01268-1.pdf","source":{"id":"https://openalex.org/S129236917","display_name":"World Wide Web","issn_l":"1386-145X","issn":["1386-145X","1573-1413"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"World Wide Web","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8100000023841858,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4395037556.pdf","grobid_xml":"https://content.openalex.org/works/W4395037556.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W2119002393","https://openalex.org/W2123152121","https://openalex.org/W2396881363","https://openalex.org/W2480764494","https://openalex.org/W2557074642","https://openalex.org/W2744140371","https://openalex.org/W2895763047","https://openalex.org/W2896538705","https://openalex.org/W2944743044","https://openalex.org/W2963329715","https://openalex.org/W2964068143","https://openalex.org/W2965570621","https://openalex.org/W2965762068","https://openalex.org/W3037702327","https://openalex.org/W3084515140","https://openalex.org/W3111386522","https://openalex.org/W3174166617","https://openalex.org/W3187287398","https://openalex.org/W3189998517","https://openalex.org/W3192905713","https://openalex.org/W3216178672","https://openalex.org/W4206985727","https://openalex.org/W4220894606","https://openalex.org/W4290927771","https://openalex.org/W4315779631","https://openalex.org/W4362587409","https://openalex.org/W4388035001"],"related_works":["https://openalex.org/W4390516098","https://openalex.org/W2003333417","https://openalex.org/W2181948922","https://openalex.org/W2384362569","https://openalex.org/W2142795561","https://openalex.org/W2378862226","https://openalex.org/W4205302943","https://openalex.org/W118236634","https://openalex.org/W2561132942","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Abstract":[0],"Recommending":[1],"medications":[2,38,50],"with":[3,32,113,162],"electronic":[4],"health":[5],"records":[6],"(EHRs)":[7],"is":[8],"a":[9,85],"challenging":[10],"task":[11],"for":[12,23,43,72,103,170],"data-driven":[13],"clinical":[14],"decision":[15],"support":[16],"systems.":[17],"Most":[18],"existing":[19,135],"models":[20,152],"learnt":[21,34],"representations":[22,61],"medical":[24,73,99,114],"concepts":[25],"based":[26],"on":[27,84,120],"EHRs":[28],"and":[29,97,159],"make":[30],"recommendations":[31],"the":[33,63,68,81,95,126,143,148,155,160,167,171],"representations.":[35],"However,":[36],"most":[37],"appear":[39],"in":[40,56,80,153],"EHR":[41,122,157],"datasets":[42,123,158],"limited":[44],"times":[45],"(the":[46],"frequency":[47],"distribution":[48],"of":[49,59,62,128,145,150],"follows":[51],"power":[52],"law":[53],"distribution),":[54],"resulting":[55],"insufficient":[57],"learning":[58],"their":[60],"medications.":[64,164],"Medical":[65],"ontologies":[66],"are":[67],"hierarchical":[69],"classification":[70],"systems":[71],"terms":[74,77],"where":[75],"similar":[76],"will":[78],"be":[79],"same":[82],"class":[83],"certain":[86],"level.":[87],"In":[88],"this":[89],"paper,":[90],"we":[91],"propose":[92],"OntoMedRec":[93,129,146],",":[94],"logically-pretrained":[96],"model-agnostic":[98],"Onto":[100],"logy":[101],"Encoders":[102],"Med":[104],"ication":[105],"Rec":[106],"ommendation":[107],"that":[108],"addresses":[109],"data":[110],"sparsity":[111],"problem":[112],"ontologies.":[115],"We":[116,165],"conduct":[117],"comprehensive":[118],"experiments":[119],"real-world":[121],"to":[124],"evaluate":[125],"effectiveness":[127],"by":[130],"integrating":[131],"it":[132],"into":[133],"various":[134,151],"downstream":[136],"medication":[137],"recommendation":[138],"models.":[139],"The":[140],"result":[141],"shows":[142],"integration":[144],"improves":[147],"performance":[149],"both":[154],"entire":[156],"admissions":[161],"few-shot":[163],"provide":[166],"GitHub":[168],"repository":[169],"source":[172],"code.":[173],"(":[174],"https://github.com/WaicongTam/OntoMedRec":[175],")":[176]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
