{"id":"https://openalex.org/W4367669997","doi":"https://doi.org/10.1007/s11280-023-01144-4","title":"Knowledge-graph-enabled biomedical entity linking: a survey","display_name":"Knowledge-graph-enabled biomedical entity linking: a survey","publication_year":2023,"publication_date":"2023-05-02","ids":{"openalex":"https://openalex.org/W4367669997","doi":"https://doi.org/10.1007/s11280-023-01144-4"},"language":"en","primary_location":{"id":"doi:10.1007/s11280-023-01144-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11280-023-01144-4","pdf_url":null,"source":{"id":"https://openalex.org/S129236917","display_name":"World Wide Web","issn_l":"1386-145X","issn":["1386-145X","1573-1413"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"World Wide Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041432645","display_name":"Jiyun Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiyun Shi","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045453305","display_name":"Zhimeng Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhimeng Yuan","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071710510","display_name":"Wenxuan Guo","orcid":"https://orcid.org/0009-0007-4823-1587"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenxuan Guo","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100410908","display_name":"Chen Ma","orcid":"https://orcid.org/0000-0001-7933-9813"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Chen Ma","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Hong Kong, 999077, China","Department of Computer Science, City University of Hong Kong, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Hong Kong, 999077, China","institution_ids":["https://openalex.org/I168719708"]},{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058773557","display_name":"Jiehao Chen","orcid":"https://orcid.org/0000-0002-2077-1908"},"institutions":[{"id":"https://openalex.org/I4210130112","display_name":"China Academy of Information and Communications Technology","ror":"https://ror.org/038dte259","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210130112","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiehao Chen","raw_affiliation_strings":["Institute for Data Application and Management, China Academy of Industrial Internet, Beijing, 100102, China","Institute for Data Application and Management, China Academy of Industrial Internet, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute for Data Application and Management, China Academy of Industrial Internet, Beijing, 100102, China","institution_ids":["https://openalex.org/I4210130112"]},{"raw_affiliation_string":"Institute for Data Application and Management, China Academy of Industrial Internet, Beijing, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032263010","display_name":"Meihui Zhang","orcid":"https://orcid.org/0000-0002-0752-9877"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Meihui Zhang","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5032263010"],"corresponding_institution_ids":["https://openalex.org/I125839683"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":1.5695,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.82733531,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"26","issue":"5","first_page":"2593","last_page":"2622"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8820468187332153},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.6560206413269043},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.574226438999176},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5702918171882629},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.556229829788208},{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.5545699000358582},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5003485679626465},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4825524687767029},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.43502798676490784},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39472147822380066},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.39406660199165344},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37475430965423584}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8820468187332153},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.6560206413269043},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.574226438999176},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5702918171882629},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.556229829788208},{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.5545699000358582},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5003485679626465},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4825524687767029},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.43502798676490784},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39472147822380066},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.39406660199165344},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37475430965423584},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11280-023-01144-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11280-023-01144-4","pdf_url":null,"source":{"id":"https://openalex.org/S129236917","display_name":"World Wide Web","issn_l":"1386-145X","issn":["1386-145X","1573-1413"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"World Wide Web","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":70,"referenced_works":["https://openalex.org/W141818611","https://openalex.org/W1172683740","https://openalex.org/W1747861911","https://openalex.org/W1964189668","https://openalex.org/W1993068388","https://openalex.org/W2002110661","https://openalex.org/W2061478295","https://openalex.org/W2071021089","https://openalex.org/W2085337304","https://openalex.org/W2107890417","https://openalex.org/W2116040937","https://openalex.org/W2123439964","https://openalex.org/W2129038679","https://openalex.org/W2131753116","https://openalex.org/W2142016317","https://openalex.org/W2146089916","https://openalex.org/W2159583324","https://openalex.org/W2169099542","https://openalex.org/W2177768736","https://openalex.org/W2251894552","https://openalex.org/W2252174377","https://openalex.org/W2259159222","https://openalex.org/W2293004735","https://openalex.org/W2298551783","https://openalex.org/W2346452181","https://openalex.org/W2414378847","https://openalex.org/W2509884321","https://openalex.org/W2512441525","https://openalex.org/W2604314403","https://openalex.org/W2740361350","https://openalex.org/W2754624511","https://openalex.org/W2788215475","https://openalex.org/W2798442412","https://openalex.org/W2808598571","https://openalex.org/W2808838104","https://openalex.org/W2911489562","https://openalex.org/W2952958555","https://openalex.org/W2962872978","https://openalex.org/W2963558486","https://openalex.org/W2985754007","https://openalex.org/W2997303394","https://openalex.org/W3004507689","https://openalex.org/W3006227201","https://openalex.org/W3030278858","https://openalex.org/W3034229721","https://openalex.org/W3035021780","https://openalex.org/W3035691659","https://openalex.org/W3046375318","https://openalex.org/W3098115739","https://openalex.org/W3098749353","https://openalex.org/W3101052398","https://openalex.org/W3103513278","https://openalex.org/W3104015140","https://openalex.org/W3105801792","https://openalex.org/W3112302290","https://openalex.org/W3131882755","https://openalex.org/W3147562045","https://openalex.org/W3167128805","https://openalex.org/W3170822064","https://openalex.org/W3175655865","https://openalex.org/W3205598244","https://openalex.org/W3212804087","https://openalex.org/W4220746420","https://openalex.org/W4221141197","https://openalex.org/W4223492536","https://openalex.org/W4223546521","https://openalex.org/W4283778430","https://openalex.org/W4287887705","https://openalex.org/W4368616878","https://openalex.org/W6721202984"],"related_works":["https://openalex.org/W2418017279","https://openalex.org/W2169373522","https://openalex.org/W1541691357","https://openalex.org/W2090135255","https://openalex.org/W2168409722","https://openalex.org/W2782437235","https://openalex.org/W2548972888","https://openalex.org/W2026505290","https://openalex.org/W1993715838","https://openalex.org/W2359088421"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-01-25T23:04:38.658462","created_date":"2025-10-10T00:00:00"}
