{"id":"https://openalex.org/W2940946288","doi":"https://doi.org/10.1007/s11265-019-01452-x","title":"Towards Accelerated Genome Informatics on Parallel HPC Platforms: The ReneGENE-GI Perspective","display_name":"Towards Accelerated Genome Informatics on Parallel HPC Platforms: The ReneGENE-GI Perspective","publication_year":2019,"publication_date":"2019-04-23","ids":{"openalex":"https://openalex.org/W2940946288","doi":"https://doi.org/10.1007/s11265-019-01452-x","mag":"2940946288"},"language":"en","primary_location":{"id":"doi:10.1007/s11265-019-01452-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11265-019-01452-x","pdf_url":null,"source":{"id":"https://openalex.org/S11258463","display_name":"Journal of Signal Processing Systems","issn_l":"1939-8018","issn":["1939-8018","1939-8115"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Signal Processing Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091343825","display_name":"Santhi Natarajan","orcid":"https://orcid.org/0000-0002-6701-826X"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Santhi Natarajan","raw_affiliation_strings":["Indian Institute of Science, Bangalore, 560012, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Science, Bangalore, 560012, India","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097187017","display_name":"Krishna Kumar N.","orcid":null},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Krishna Kumar N.","raw_affiliation_strings":["Indian Institute of Science, Bangalore, 560012, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Science, Bangalore, 560012, India","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026479756","display_name":"Debnath Pal","orcid":"https://orcid.org/0000-0002-3591-5978"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Debnath Pal","raw_affiliation_strings":["Indian Institute of Science, Bangalore, 560012, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Science, Bangalore, 560012, India","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112000841","display_name":"S. K. Nandy","orcid":null},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"S. K. Nandy","raw_affiliation_strings":["Indian Institute of Science, Bangalore, 560012, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Science, Bangalore, 560012, India","institution_ids":["https://openalex.org/I59270414"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5091343825"],"corresponding_institution_ids":["https://openalex.org/I59270414"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02940561,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"92","issue":"10","first_page":"1197","last_page":"1213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8309544324874878},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7330134510993958},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6169804334640503},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5616130828857422},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.5589935779571533},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5246284604072571},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.46735572814941406},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.4583872854709625},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.44031649827957153},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.40670090913772583},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.35884857177734375},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.33556580543518066},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.20381861925125122},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.126848965883255}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8309544324874878},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7330134510993958},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6169804334640503},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5616130828857422},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.5589935779571533},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5246284604072571},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.46735572814941406},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.4583872854709625},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.44031649827957153},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.40670090913772583},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.35884857177734375},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.33556580543518066},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.20381861925125122},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.126848965883255},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s11265-019-01452-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11265-019-01452-x","pdf_url":null,"source":{"id":"https://openalex.org/S11258463","display_name":"Journal of Signal Processing Systems","issn_l":"1939-8018","issn":["1939-8018","1939-8115"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Signal Processing Systems","raw_type":"journal-article"},{"id":"pmh:oai::80216","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401429","display_name":"ePrints@IISc (Indian Institute of Science)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59270414","host_organization_name":"Indian Institute of Science Bangalore","host_organization_lineage":["https://openalex.org/I59270414"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1484435918","https://openalex.org/W1509676205","https://openalex.org/W1599740911","https://openalex.org/W1898040642","https://openalex.org/W1948283632","https://openalex.org/W1982088757","https://openalex.org/W2001496424","https://openalex.org/W2037113830","https://openalex.org/W2037953066","https://openalex.org/W2046137036","https://openalex.org/W2058087601","https://openalex.org/W2072763119","https://openalex.org/W2081930221","https://openalex.org/W2087064593","https://openalex.org/W2091193685","https://openalex.org/W2093931624","https://openalex.org/W2099964107","https://openalex.org/W2104846587","https://openalex.org/W2105821863","https://openalex.org/W2107824361","https://openalex.org/W2120122292","https://openalex.org/W2136140939","https://openalex.org/W2144316495","https://openalex.org/W2154468535","https://openalex.org/W2165156013","https://openalex.org/W2169230115","https://openalex.org/W2330100020","https://openalex.org/W2535093252","https://openalex.org/W2560228154","https://openalex.org/W2576765647","https://openalex.org/W2796139180","https://openalex.org/W2796252340","https://openalex.org/W2898051748","https://openalex.org/W6664801737","https://openalex.org/W6668594571"],"related_works":["https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2080146221","https://openalex.org/W2370314112","https://openalex.org/W1912958759","https://openalex.org/W2792081825"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
