{"id":"https://openalex.org/W2018155599","doi":"https://doi.org/10.1007/s11265-008-0262-y","title":"Hardware Acceleration of HMMER on FPGAs","display_name":"Hardware Acceleration of HMMER on FPGAs","publication_year":2008,"publication_date":"2008-10-01","ids":{"openalex":"https://openalex.org/W2018155599","doi":"https://doi.org/10.1007/s11265-008-0262-y","mag":"2018155599"},"language":"en","primary_location":{"id":"doi:10.1007/s11265-008-0262-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11265-008-0262-y","pdf_url":null,"source":{"id":"https://openalex.org/S11258463","display_name":"Journal of Signal Processing Systems","issn_l":"1939-8018","issn":["1939-8018","1939-8115"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Signal Processing Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053526033","display_name":"Steven Derrien","orcid":"https://orcid.org/0000-0002-6281-083X"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Steven Derrien","raw_affiliation_strings":["IRISA, Rennes, France","IRISA, Rennes, France#TAB#"],"affiliations":[{"raw_affiliation_string":"IRISA, Rennes, France","institution_ids":["https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA, Rennes, France#TAB#","institution_ids":["https://openalex.org/I2802519937"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111996414","display_name":"Patrice Quinton","orcid":null},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patrice Quinton","raw_affiliation_strings":["IRISA, Rennes, France","IRISA, Rennes, France#TAB#"],"affiliations":[{"raw_affiliation_string":"IRISA, Rennes, France","institution_ids":["https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA, Rennes, France#TAB#","institution_ids":["https://openalex.org/I2802519937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5053526033"],"corresponding_institution_ids":["https://openalex.org/I2802519937"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":0.5503,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.66232175,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"58","issue":"1","first_page":"53","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8075019121170044},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.7339744567871094},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6788396835327148},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.624085009098053},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6003988981246948},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.5174606442451477},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.5001969337463379},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.47214794158935547},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3662465810775757},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.25550219416618347},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10171836614608765},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10068556666374207}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8075019121170044},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.7339744567871094},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6788396835327148},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.624085009098053},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6003988981246948},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.5174606442451477},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.5001969337463379},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.47214794158935547},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3662465810775757},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.25550219416618347},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10171836614608765},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10068556666374207},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.0},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s11265-008-0262-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11265-008-0262-y","pdf_url":null,"source":{"id":"https://openalex.org/S11258463","display_name":"Journal of Signal Processing Systems","issn_l":"1939-8018","issn":["1939-8018","1939-8115"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Signal Processing Systems","raw_type":"journal-article"},{"id":"pmh:oai:HAL:inria-00453947v1","is_oa":false,"landing_page_url":"https://inria.hal.science/inria-00453947","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Signal Processing Systems, 2010, 58 (1), pp.53-67. &#x27E8;10.1007/s11265-008-0262-y&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.8500000238418579}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1593585039","https://openalex.org/W1598336441","https://openalex.org/W1970141743","https://openalex.org/W1998451895","https://openalex.org/W2011539284","https://openalex.org/W2023226967","https://openalex.org/W2038495591","https://openalex.org/W2054388411","https://openalex.org/W2059848742","https://openalex.org/W2079092669","https://openalex.org/W2085804071","https://openalex.org/W2102122585","https://openalex.org/W2129717941","https://openalex.org/W2130212247","https://openalex.org/W2135915979","https://openalex.org/W2141885858","https://openalex.org/W2158714788","https://openalex.org/W2161711423","https://openalex.org/W2165752568","https://openalex.org/W2166760518","https://openalex.org/W2983923412","https://openalex.org/W4234407207","https://openalex.org/W4256701974"],"related_works":["https://openalex.org/W2111241003","https://openalex.org/W4200391368","https://openalex.org/W2355315220","https://openalex.org/W2210979487","https://openalex.org/W2074043759","https://openalex.org/W2389214306","https://openalex.org/W2373535795","https://openalex.org/W2146872326","https://openalex.org/W2518118925","https://openalex.org/W3159273459"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
