{"id":"https://openalex.org/W7125828322","doi":"https://doi.org/10.1007/s11227-025-08182-x","title":"Adapting LLMs for biomedical natural language processing: a comprehensive benchmark study on fine-tuning methods","display_name":"Adapting LLMs for biomedical natural language processing: a comprehensive benchmark study on fine-tuning methods","publication_year":2026,"publication_date":"2026-01-27","ids":{"openalex":"https://openalex.org/W7125828322","doi":"https://doi.org/10.1007/s11227-025-08182-x"},"language":"en","primary_location":{"id":"doi:10.1007/s11227-025-08182-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-025-08182-x","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5123909464","display_name":"Junjie Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I200845125","display_name":"Nanjing University of Information Science and Technology","ror":"https://ror.org/02y0rxk19","country_code":"CN","type":"education","lineage":["https://openalex.org/I200845125"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junjie Zhu","raw_affiliation_strings":["Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I200845125"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123946639","display_name":"Jin Li","orcid":null},"institutions":[{"id":"https://openalex.org/I200845125","display_name":"Nanjing University of Information Science and Technology","ror":"https://ror.org/02y0rxk19","country_code":"CN","type":"education","lineage":["https://openalex.org/I200845125"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin Li","raw_affiliation_strings":["Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I200845125"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123996614","display_name":"Shen Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210093194","display_name":"Fudan University Shanghai Cancer Center","ror":"https://ror.org/00my25942","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210093194"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shen Zhao","raw_affiliation_strings":["Department of Breast Surgery, Fudan University Shanghai Cancer Center, Shanghai, China","Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Department of Breast Surgery, Fudan University Shanghai Cancer Center, Shanghai, China","institution_ids":["https://openalex.org/I4210093194"]},{"raw_affiliation_string":"Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I133868755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123993459","display_name":"Yiyan Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I200845125","display_name":"Nanjing University of Information Science and Technology","ror":"https://ror.org/02y0rxk19","country_code":"CN","type":"education","lineage":["https://openalex.org/I200845125"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiyan Deng","raw_affiliation_strings":["Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I200845125"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123971977","display_name":"Yongming Miao","orcid":null},"institutions":[{"id":"https://openalex.org/I200845125","display_name":"Nanjing University of Information Science and Technology","ror":"https://ror.org/02y0rxk19","country_code":"CN","type":"education","lineage":["https://openalex.org/I200845125"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongming Miao","raw_affiliation_strings":["Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I200845125"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5123910200","display_name":"Jun Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I200845125","display_name":"Nanjing University of Information Science and Technology","ror":"https://ror.org/02y0rxk19","country_code":"CN","type":"education","lineage":["https://openalex.org/I200845125"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jun Xu","raw_affiliation_strings":["Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Intelligent Medical Image Computing, Nanjing University of Information Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I200845125"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5123910200"],"corresponding_institution_ids":["https://openalex.org/I200845125"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28930918,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"82","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.2775000035762787,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.2775000035762787,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.23600000143051147,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.16179999709129333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.8955000042915344},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.5845000147819519},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.39719998836517334},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.3361000120639801}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.8955000042915344},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8152999877929688},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.5845000147819519},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42750000953674316},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.39719998836517334},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3831999897956848},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34610000252723694},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.3361000120639801},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.28279998898506165},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.2565000057220459}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11227-025-08182-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-025-08182-x","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5835474729537964}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W2250539671","https://openalex.org/W2911489562","https://openalex.org/W2963716420","https://openalex.org/W2964179635","https://openalex.org/W2971258845","https://openalex.org/W3046375318","https://openalex.org/W3179963059","https://openalex.org/W4205991051","https://openalex.org/W4285247752","https://openalex.org/W4297253404","https://openalex.org/W4367186868","https://openalex.org/W4384071683","https://openalex.org/W4384561707","https://openalex.org/W4386120650","https://openalex.org/W4386530347","https://openalex.org/W4391069701","https://openalex.org/W4392449689","https://openalex.org/W4392705645","https://openalex.org/W4394579747","https://openalex.org/W4394845024","https://openalex.org/W4396722287","https://openalex.org/W4397047623","https://openalex.org/W4399326970","https://openalex.org/W4399768237","https://openalex.org/W4401042457","https://openalex.org/W4402407635","https://openalex.org/W4403681364","https://openalex.org/W4404729147","https://openalex.org/W4405736832","https://openalex.org/W4405763549","https://openalex.org/W4406070100","https://openalex.org/W4406133973","https://openalex.org/W4406259849","https://openalex.org/W4407952631","https://openalex.org/W4409190866","https://openalex.org/W4409235791"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-28T23:18:48.515280","created_date":"2026-01-28T00:00:00"}
