{"id":"https://openalex.org/W3197749299","doi":"https://doi.org/10.1007/s11227-021-04025-7","title":"MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters","display_name":"MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters","publication_year":2021,"publication_date":"2021-08-25","ids":{"openalex":"https://openalex.org/W3197749299","doi":"https://doi.org/10.1007/s11227-021-04025-7","mag":"3197749299"},"language":"en","primary_location":{"id":"doi:10.1007/s11227-021-04025-7","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11227-021-04025-7","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11227-021-04025-7.pdf","source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s11227-021-04025-7.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008112601","display_name":"Jorge Gonz\u00e1lez\u2010Dom\u00ednguez","orcid":"https://orcid.org/0000-0002-2602-4874"},"institutions":[{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jorge Gonz\u00e1lez-Dom\u00ednguez","raw_affiliation_strings":["CITIC, Computer Architecture Group, Universidade da Coru\u00f1a, A Coru\u00f1a, Spain"],"affiliations":[{"raw_affiliation_string":"CITIC, Computer Architecture Group, Universidade da Coru\u00f1a, A Coru\u00f1a, Spain","institution_ids":["https://openalex.org/I11019714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101916800","display_name":"Jos\u00e9 M. Mart\u00edn-Mart\u00ednez","orcid":null},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M. Mart\u00edn-Mart\u00ednez","raw_affiliation_strings":["Institute Carlos I for Theoretical and Computational Physics, Universidad de Granada, Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Institute Carlos I for Theoretical and Computational Physics, Universidad de Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066348145","display_name":"Roberto R. Exp\u00f3sito","orcid":"https://orcid.org/0000-0002-2077-1473"},"institutions":[{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roberto R. Exp\u00f3sito","raw_affiliation_strings":["CITIC, Computer Architecture Group, Universidade da Coru\u00f1a, A Coru\u00f1a, Spain"],"affiliations":[{"raw_affiliation_string":"CITIC, Computer Architecture Group, Universidade da Coru\u00f1a, A Coru\u00f1a, Spain","institution_ids":["https://openalex.org/I11019714"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5008112601"],"corresponding_institution_ids":["https://openalex.org/I11019714"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":{"value":2390,"currency":"EUR","value_usd":2990},"fwci":0.1627,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.49509364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"78","issue":"3","first_page":"4217","last_page":"4235"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.9169669151306152},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.7553764581680298},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.632146418094635},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5698891282081604},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5523428320884705},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.5495688319206238},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.49025729298591614},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.27709075808525085},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22272655367851257},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09669002890586853},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06836485862731934}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.9169669151306152},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.7553764581680298},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.632146418094635},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5698891282081604},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5523428320884705},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.5495688319206238},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.49025729298591614},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.27709075808525085},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22272655367851257},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09669002890586853},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06836485862731934},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s11227-021-04025-7","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11227-021-04025-7","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11227-021-04025-7.pdf","source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},{"id":"pmh:oai:ruc.udc.es:2183/30194","is_oa":true,"landing_page_url":"http://hdl.handle.net/2183/30194","pdf_url":null,"source":{"id":"https://openalex.org/S4306402204","display_name":"RUC (Universidade Da Coru\u00f1a)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:10726975","is_oa":true,"landing_page_url":"https://hdl.handle.net/2183/30194","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Supercomputing, 78(3), 4217-4235, (2022-02)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1007/s11227-021-04025-7","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11227-021-04025-7","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11227-021-04025-7.pdf","source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1218400627","display_name":null,"funder_award_id":"2019-2022","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G1358439994","display_name":null,"funder_award_id":"(PID2019-104184RB-I00 / AEI / 10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G1496055848","display_name":null,"funder_award_id":"ED431C","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G1509531748","display_name":null,"funder_award_id":"AEI / 10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G1650125035","display_name":null,"funder_award_id":"B-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G230230324","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G2309174360","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2530961444","display_name":null,"funder_award_id":"ED431C 2021/30","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G2680232732","display_name":null,"funder_award_id":"PID2019-104184RB-I00 / AEI / 10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G272322064","display_name":null,"funder_award_id":"ED431G 20","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G300979063","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3025668325","display_name":null,"funder_award_id":"RB-I00","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3690828678","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G3876637791","display_name":null,"funder_award_id":"ED431G","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G4126322094","display_name":null,"funder_award_id":"01100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4429097262","display_name":null,"funder_award_id":"AEI / 10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4816244515","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4912030886","display_name":null,"funder_award_id":"2019-2022","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5421974903","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5589930466","display_name":null,"funder_award_id":"2019-20","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6056837937","display_name":null,"funder_award_id":"PID2019-104184RB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6414947460","display_name":null,"funder_award_id":"FEDER f","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G661330594","display_name":null,"funder_award_id":"00110","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6685425346","display_name":null,"funder_award_id":"0011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7224627388","display_name":null,"funder_award_id":"ED431","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G726424357","display_name":null,"funder_award_id":"ED431G 2019/01","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7643708868","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G801766868","display_name":null,"funder_award_id":"ED431G 2019/0","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G8055432103","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G8260616629","display_name":null,"funder_award_id":"011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8352492595","display_name":null,"funder_award_id":"0.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G8638682022","display_name":null,"funder_award_id":"10.13039/50110001103","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8684520763","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320326655","display_name":"Xunta de Galicia","ror":"https://ror.org/0181xnw06"},{"id":"https://openalex.org/F4320328562","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3197749299.pdf","grobid_xml":"https://content.openalex.org/works/W3197749299.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1988888548","https://openalex.org/W2039752257","https://openalex.org/W2061980860","https://openalex.org/W2096366535","https://openalex.org/W2102007365","https://openalex.org/W2108350018","https://openalex.org/W2111921000","https://openalex.org/W2112814753","https://openalex.org/W2113333419","https://openalex.org/W2130396264","https://openalex.org/W2132394658","https://openalex.org/W2142616818","https://openalex.org/W2148213390","https://openalex.org/W2167084861","https://openalex.org/W2209424705","https://openalex.org/W2557840395","https://openalex.org/W2605445948","https://openalex.org/W2620187133","https://openalex.org/W2732989877","https://openalex.org/W2767665981","https://openalex.org/W2786119759","https://openalex.org/W2888145406","https://openalex.org/W2903458588","https://openalex.org/W2946393812","https://openalex.org/W2951362868","https://openalex.org/W2952957075","https://openalex.org/W2958084072","https://openalex.org/W2987237172","https://openalex.org/W3040531919","https://openalex.org/W3044594590","https://openalex.org/W3098623444","https://openalex.org/W3105899306","https://openalex.org/W4242729757","https://openalex.org/W6700646015"],"related_works":["https://openalex.org/W1542410906","https://openalex.org/W197049984","https://openalex.org/W1993191611","https://openalex.org/W2023938924","https://openalex.org/W2918840249","https://openalex.org/W1991859582","https://openalex.org/W2110053126","https://openalex.org/W2316512426","https://openalex.org/W2104702637","https://openalex.org/W2079303253"],"abstract_inverted_index":{"Abstract":[0],"Tandem":[1],"Repeats":[2],"(TRs)":[3],"are":[4,33],"segments":[5],"that":[6,105,111],"occur":[7],"several":[8],"times":[9,165],"in":[10,53,55,116],"a":[11,49,67,85,99,117,168],"DNA":[12],"sequence,":[13],"and":[14,44,61,108,122],"each":[15],"copy":[16],"is":[17,151,175],"adjacent":[18],"to":[19,35,57,71,153,178],"other.":[20],"In":[21],"the":[22,79,144,147,155],"last":[23],"few":[24],"years,":[25],"TRs":[26,46],"have":[27,47],"gained":[28],"significant":[29],"attention":[30],"as":[31,159],"they":[32],"thought":[34],"be":[36,114],"related":[37],"with":[38,63],"certain":[39],"human":[40],"diseases.":[41],"Therefore,":[42],"identifying":[43],"classifying":[45],"become":[48],"highly":[50],"important":[51],"task":[52],"bioinformatics":[54],"order":[56],"analyze":[58],"their":[59],"disorders":[60],"relationships":[62],"illnesses.":[64],"Dot2dot":[65,160],",":[66,98],"tool":[68,104],"recently":[69],"developed":[70],"find":[72],"TRs,":[73],"provides":[74],"more":[75,162],"accurate":[76],"results":[77,158],"than":[78,163],"previous":[80],"state-of-the-art,":[81],"but":[82,161],"it":[83,112,150],"requires":[84],"long":[86],"execution":[87,126],"time":[88],"even":[89],"when":[90],"using":[91,138],"multiple":[92],"threads.":[93],"This":[94],"work":[95],"presents":[96],"MPI-dot2dot":[97,174],"novel":[100],"version":[101],"of":[102,119,130,146],"this":[103,131],"combines":[106],"MPI":[107],"OpenMP":[109],"so":[110],"can":[113],"executed":[115],"cluster":[118,171],"multicore":[120,170],"nodes":[121],"thus":[123],"reduces":[124],"its":[125],"time.":[127],"The":[128],"performance":[129],"new":[132],"parallel":[133],"implementation":[134],"has":[135],"been":[136],"tested":[137],"different":[139],"real":[140],"datasets.":[141],"Depending":[142],"on":[143,167],"characteristics":[145],"input":[148],"genomes,":[149],"able":[152],"obtain":[154],"same":[156],"biological":[157],"100":[164],"faster":[166],"16-node":[169],"(384":[172],"cores).":[173],"publicly":[176],"available":[177],"download":[179],"from":[180],"https://sourceforge.net/projects/mpi-dot2dot":[181],".":[182]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
