{"id":"https://openalex.org/W3148480851","doi":"https://doi.org/10.1007/s11227-021-03691-x","title":"Co-designing HPC-systems by computing capabilities and management flexibility to accommodate bioinformatic workflows at different complexity levels","display_name":"Co-designing HPC-systems by computing capabilities and management flexibility to accommodate bioinformatic workflows at different complexity levels","publication_year":2021,"publication_date":"2021-04-06","ids":{"openalex":"https://openalex.org/W3148480851","doi":"https://doi.org/10.1007/s11227-021-03691-x","mag":"3148480851"},"language":"en","primary_location":{"id":"doi:10.1007/s11227-021-03691-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-021-03691-x","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028479633","display_name":"Dmitry Suplatov","orcid":"https://orcid.org/0000-0002-7054-3487"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Dmitry Suplatov","raw_affiliation_strings":["Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109443479","display_name":"Maxim Shegay","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Maxim Shegay","raw_affiliation_strings":["Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032100669","display_name":"Yana Sharapova","orcid":"https://orcid.org/0000-0003-1250-6570"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Yana Sharapova","raw_affiliation_strings":["Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113213952","display_name":"Ivan Timokhin","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ivan Timokhin","raw_affiliation_strings":["Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005607792","display_name":"\u041d. \u041d. \u041f\u043e\u043f\u043e\u0432\u0430","orcid":"https://orcid.org/0000-0002-3339-1365"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Nina Popova","raw_affiliation_strings":["Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044421524","display_name":"Vladimir Voevodin","orcid":"https://orcid.org/0000-0001-6036-5106"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I4210159227","display_name":"Institute of Mathematical Problems of Biology","ror":"https://ror.org/04xtpdj18","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601","https://openalex.org/I4210159227"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Vladimir Voevodin","raw_affiliation_strings":["Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia","Research Computing Center, Lomonosov Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]},{"raw_affiliation_string":"Research Computing Center, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235","https://openalex.org/I4210159227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033744508","display_name":"Vytas K. \u0160vedas","orcid":"https://orcid.org/0000-0002-1664-0307"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Vytas \u0160vedas","raw_affiliation_strings":["Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia","Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Lenin Hills 1-73, Moscow, Russia, 119234"],"affiliations":[{"raw_affiliation_string":"Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]},{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Lenin Hills 1-73, Moscow, Russia, 119234","institution_ids":["https://openalex.org/I19880235"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5028479633"],"corresponding_institution_ids":["https://openalex.org/I19880235"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":1.0034,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.87381978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"77","issue":"11","first_page":"12382","last_page":"12398"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.906165361404419},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7315607666969299},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6765034198760986},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.6318421363830566},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.528876781463623},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5001716613769531},{"id":"https://openalex.org/keywords/complexity-management","display_name":"Complexity management","score":0.4365122616291046},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.35160455107688904},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.33631211519241333},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3099961280822754},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.189904123544693}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.906165361404419},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7315607666969299},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6765034198760986},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.6318421363830566},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.528876781463623},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5001716613769531},{"id":"https://openalex.org/C57936825","wikidata":"https://www.wikidata.org/wiki/Q1780925","display_name":"Complexity management","level":2,"score":0.4365122616291046},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.35160455107688904},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.33631211519241333},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3099961280822754},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.189904123544693},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11227-021-03691-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-021-03691-x","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5016262575","display_name":null,"funder_award_id":"20-07-00970","funder_id":"https://openalex.org/F4320321079","funder_display_name":"Russian Foundation for Basic Research"}],"funders":[{"id":"https://openalex.org/F4320321079","display_name":"Russian Foundation for Basic Research","ror":"https://ror.org/02mh1ke95"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1967538863","https://openalex.org/W1996431131","https://openalex.org/W1998219462","https://openalex.org/W2057461700","https://openalex.org/W2096041635","https://openalex.org/W2103374386","https://openalex.org/W2139119119","https://openalex.org/W2144998676","https://openalex.org/W2294028555","https://openalex.org/W2313116527","https://openalex.org/W2466930524","https://openalex.org/W2472412395","https://openalex.org/W2559919086","https://openalex.org/W2572857085","https://openalex.org/W2605897695","https://openalex.org/W2745824628","https://openalex.org/W2776264363","https://openalex.org/W2780263532","https://openalex.org/W2783337342","https://openalex.org/W2791481803","https://openalex.org/W2799404206","https://openalex.org/W2800556297","https://openalex.org/W2801816600","https://openalex.org/W2802717482","https://openalex.org/W2886761756","https://openalex.org/W2898364362","https://openalex.org/W2901673260","https://openalex.org/W2903504045","https://openalex.org/W2904890758","https://openalex.org/W2922047523","https://openalex.org/W2927518284","https://openalex.org/W2940703492","https://openalex.org/W2941925252","https://openalex.org/W2942753550","https://openalex.org/W2944425327","https://openalex.org/W2946281764","https://openalex.org/W2949267672","https://openalex.org/W2950873526","https://openalex.org/W2953089576","https://openalex.org/W2964301053","https://openalex.org/W2970667920","https://openalex.org/W2980822416","https://openalex.org/W2992220699","https://openalex.org/W2998652703","https://openalex.org/W3003199325","https://openalex.org/W3004125731","https://openalex.org/W3008651416","https://openalex.org/W3011341255","https://openalex.org/W3015365194","https://openalex.org/W3016020348","https://openalex.org/W3016533682","https://openalex.org/W3022987161","https://openalex.org/W3035691127","https://openalex.org/W3078497020","https://openalex.org/W3097836337","https://openalex.org/W3113193038","https://openalex.org/W3132233829","https://openalex.org/W3136918052","https://openalex.org/W3154891223"],"related_works":["https://openalex.org/W2383825939","https://openalex.org/W1767718647","https://openalex.org/W2163886373","https://openalex.org/W2544948399","https://openalex.org/W3150259945","https://openalex.org/W2777681936","https://openalex.org/W2131878791","https://openalex.org/W2161655038","https://openalex.org/W2074952237","https://openalex.org/W1161660097"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
