{"id":"https://openalex.org/W2932404384","doi":"https://doi.org/10.1007/s11227-019-02834-5","title":"Efficient GPU-based parallelization of solvation calculation for the blind docking problem","display_name":"Efficient GPU-based parallelization of solvation calculation for the blind docking problem","publication_year":2019,"publication_date":"2019-04-05","ids":{"openalex":"https://openalex.org/W2932404384","doi":"https://doi.org/10.1007/s11227-019-02834-5","mag":"2932404384"},"language":"en","primary_location":{"id":"doi:10.1007/s11227-019-02834-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-019-02834-5","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032550530","display_name":"Hocine Saadi","orcid":"https://orcid.org/0000-0001-5086-7807"},"institutions":[{"id":"https://openalex.org/I4210095777","display_name":"Centre de Recherche sur l'Information Scientifique et Technique","ror":"https://ror.org/01k1bte55","country_code":"DZ","type":"government","lineage":["https://openalex.org/I4210095777","https://openalex.org/I4210114810"]},{"id":"https://openalex.org/I4210125514","display_name":"Universit\u00e9 Djilali de Sidi Bel Abb\u00e8s","ror":"https://ror.org/0378szg41","country_code":"DZ","type":"education","lineage":["https://openalex.org/I4210125514"]}],"countries":["DZ"],"is_corresponding":true,"raw_author_name":"Hocine Saadi","raw_affiliation_strings":["CERIST, Research Center Algiers, Algiers, Algeria","Univesity Djillali LIABES of Sidi Bel Abb\u00e9s, Sidi Bel Abb\u00e9s, Algeria"],"raw_orcid":"https://orcid.org/0000-0001-5086-7807","affiliations":[{"raw_affiliation_string":"CERIST, Research Center Algiers, Algiers, Algeria","institution_ids":["https://openalex.org/I4210095777"]},{"raw_affiliation_string":"Univesity Djillali LIABES of Sidi Bel Abb\u00e9s, Sidi Bel Abb\u00e9s, Algeria","institution_ids":["https://openalex.org/I4210125514"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044754324","display_name":"Nadia Nouali Taboudjemat","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095777","display_name":"Centre de Recherche sur l'Information Scientifique et Technique","ror":"https://ror.org/01k1bte55","country_code":"DZ","type":"government","lineage":["https://openalex.org/I4210095777","https://openalex.org/I4210114810"]}],"countries":["DZ"],"is_corresponding":false,"raw_author_name":"Nadia Nouali Taboudjemat","raw_affiliation_strings":["CERIST, Research Center Algiers, Algiers, Algeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERIST, Research Center Algiers, Algiers, Algeria","institution_ids":["https://openalex.org/I4210095777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039636088","display_name":"Abdellatif Rahmoun","orcid":"https://orcid.org/0000-0002-8227-3322"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Abdellatif Rahmoun","raw_affiliation_strings":["ESI-SBA High School of Computer Sciences Sidi Bel-Abb\u00e9s, Algeria LabRI Research Laboratory, Sidi Bel-Abb\u00e9s, Algeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ESI-SBA High School of Computer Sciences Sidi Bel-Abb\u00e9s, Algeria LabRI Research Laboratory, Sidi Bel-Abb\u00e9s, Algeria","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028232016","display_name":"Baldomero Imbern\u00f3n","orcid":"https://orcid.org/0000-0002-2758-8364"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Baldomero imbern\u00f3n","raw_affiliation_strings":["Bioinformatics and High Performance Computing Research Group (BIO-HPC), Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107, Murcia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and High Performance Computing Research Group (BIO-HPC), Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107, Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037673215","display_name":"Horacio P\u00e9rez\u2010S\u00e1nchez","orcid":"https://orcid.org/0000-0003-4468-7898"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Horacio P\u00e9rez-S\u00e1nchez","raw_affiliation_strings":["Bioinformatics and High Performance Computing Research Group (BIO-HPC), Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107, Murcia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and High Performance Computing Research Group (BIO-HPC), Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107, Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088468258","display_name":"Jos\u00e9 M. Cecilia","orcid":"https://orcid.org/0000-0001-5648-214X"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M. Cecilia","raw_affiliation_strings":["Bioinformatics and High Performance Computing Research Group (BIO-HPC), Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107, Murcia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and High Performance Computing Research Group (BIO-HPC), Computer Engineering Department, Universidad Cat\u00f3lica de Murcia (UCAM), 30107, Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5032550530"],"corresponding_institution_ids":["https://openalex.org/I4210095777","https://openalex.org/I4210125514"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.7712,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.73567358,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"76","issue":"3","first_page":"1980","last_page":"1998"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8831865191459656},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7461584806442261},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7456981539726257},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.599351167678833},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5368856191635132},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5210915803909302},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4619240164756775},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.45048168301582336},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.42803704738616943},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.31211912631988525}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8831865191459656},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7461584806442261},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7456981539726257},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.599351167678833},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5368856191635132},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5210915803909302},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4619240164756775},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.45048168301582336},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.42803704738616943},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.31211912631988525},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11227-019-02834-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-019-02834-5","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W164384110","https://openalex.org/W1653739410","https://openalex.org/W1762731526","https://openalex.org/W2000335122","https://openalex.org/W2005925339","https://openalex.org/W2027978582","https://openalex.org/W2033882981","https://openalex.org/W2093645425","https://openalex.org/W2105668062","https://openalex.org/W2127760066","https://openalex.org/W2136513242","https://openalex.org/W2150056503","https://openalex.org/W2158534713","https://openalex.org/W2158575911","https://openalex.org/W2165526004","https://openalex.org/W2169064131","https://openalex.org/W2188424859","https://openalex.org/W2269454992","https://openalex.org/W2295862081","https://openalex.org/W2752386062","https://openalex.org/W2754773169","https://openalex.org/W4250981202"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2013643406","https://openalex.org/W2891987081","https://openalex.org/W1582436825","https://openalex.org/W1996803181","https://openalex.org/W2979588510"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
