{"id":"https://openalex.org/W2020095435","doi":"https://doi.org/10.1007/s11227-014-1297-4","title":"A survey of genome sequence assembly techniques and algorithms using high-performance computing","display_name":"A survey of genome sequence assembly techniques and algorithms using high-performance computing","publication_year":2014,"publication_date":"2014-10-03","ids":{"openalex":"https://openalex.org/W2020095435","doi":"https://doi.org/10.1007/s11227-014-1297-4","mag":"2020095435"},"language":"en","primary_location":{"id":"doi:10.1007/s11227-014-1297-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-014-1297-4","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004790822","display_name":"Munib Ahmed","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Munib Ahmed","raw_affiliation_strings":["University of Texas at Arlington, Arlington, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington, Arlington, USA","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052942094","display_name":"Ishfaq Ahmad","orcid":"https://orcid.org/0000-0001-5654-7951"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ishfaq Ahmad","raw_affiliation_strings":["University of Texas at Arlington, Arlington, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington, Arlington, USA","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033497979","display_name":"Mohammad Saad Ahmad","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Saad Ahmad","raw_affiliation_strings":["University of Texas at Arlington, Arlington, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington, Arlington, USA","institution_ids":["https://openalex.org/I189196454"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004790822"],"corresponding_institution_ids":["https://openalex.org/I189196454"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.2843,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.59078457,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"71","issue":"1","first_page":"293","last_page":"339"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8166730999946594},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6608136892318726},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5842176675796509},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5696691274642944},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.5249381065368652},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47110515832901},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46989747881889343},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4494030177593231},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.41272640228271484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10286113619804382},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09781220555305481}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8166730999946594},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6608136892318726},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5842176675796509},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5696691274642944},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5249381065368652},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47110515832901},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46989747881889343},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4494030177593231},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.41272640228271484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10286113619804382},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09781220555305481},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11227-014-1297-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-014-1297-4","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W62172238","https://openalex.org/W62283237","https://openalex.org/W145805655","https://openalex.org/W290667870","https://openalex.org/W938539187","https://openalex.org/W1504133853","https://openalex.org/W1578516052","https://openalex.org/W1580560707","https://openalex.org/W1611898338","https://openalex.org/W1658221551","https://openalex.org/W1752746544","https://openalex.org/W1966822396","https://openalex.org/W1971707621","https://openalex.org/W1982693868","https://openalex.org/W1990061958","https://openalex.org/W1996231070","https://openalex.org/W1998139877","https://openalex.org/W2011632360","https://openalex.org/W2021755193","https://openalex.org/W2027743341","https://openalex.org/W2046415427","https://openalex.org/W2063450941","https://openalex.org/W2071350169","https://openalex.org/W2072357181","https://openalex.org/W2074231493","https://openalex.org/W2075560011","https://openalex.org/W2075871133","https://openalex.org/W2078872173","https://openalex.org/W2082658158","https://openalex.org/W2083432626","https://openalex.org/W2083838623","https://openalex.org/W2087064593","https://openalex.org/W2089774788","https://openalex.org/W2094031081","https://openalex.org/W2097706568","https://openalex.org/W2099809434","https://openalex.org/W2103903744","https://openalex.org/W2104189907","https://openalex.org/W2114752404","https://openalex.org/W2115348070","https://openalex.org/W2121016876","https://openalex.org/W2122910323","https://openalex.org/W2122954888","https://openalex.org/W2124117796","https://openalex.org/W2126332379","https://openalex.org/W2126466006","https://openalex.org/W2127230663","https://openalex.org/W2127860913","https://openalex.org/W2131808612","https://openalex.org/W2132926880","https://openalex.org/W2136651963","https://openalex.org/W2137015675","https://openalex.org/W2138270253","https://openalex.org/W2140277987","https://openalex.org/W2141217788","https://openalex.org/W2141411672","https://openalex.org/W2144362290","https://openalex.org/W2144662851","https://openalex.org/W2146072140","https://openalex.org/W2146338925","https://openalex.org/W2146696273","https://openalex.org/W2147411008","https://openalex.org/W2151440203","https://openalex.org/W2151899848","https://openalex.org/W2155518645","https://openalex.org/W2157748131","https://openalex.org/W2158714788","https://openalex.org/W2159497035","https://openalex.org/W2161546116","https://openalex.org/W2161668137","https://openalex.org/W2164075646","https://openalex.org/W2166265186","https://openalex.org/W2272919405","https://openalex.org/W2318660391","https://openalex.org/W2402319978","https://openalex.org/W2610179052","https://openalex.org/W2709625040","https://openalex.org/W4206122585","https://openalex.org/W4246513656"],"related_works":["https://openalex.org/W2767590279","https://openalex.org/W2213265806","https://openalex.org/W3090794301","https://openalex.org/W2166654698","https://openalex.org/W2079322808","https://openalex.org/W4210830088","https://openalex.org/W2923364412","https://openalex.org/W2772185703","https://openalex.org/W1966822396","https://openalex.org/W1975465622"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
