{"id":"https://openalex.org/W4413448766","doi":"https://doi.org/10.1007/s11047-025-10051-8","title":"A formalization of co-transcriptional splicing as an operation on formal languages","display_name":"A formalization of co-transcriptional splicing as an operation on formal languages","publication_year":2025,"publication_date":"2025-08-23","ids":{"openalex":"https://openalex.org/W4413448766","doi":"https://doi.org/10.1007/s11047-025-10051-8"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-025-10051-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-025-10051-8","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007055038","display_name":"Da-Jung Cho","orcid":null},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Da-Jung Cho","raw_affiliation_strings":["Department of Software and Computer Engineering, Ajou University, 206 World cup-ro, Suwon-si, Gyeonggi-do, 16499, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software and Computer Engineering, Ajou University, 206 World cup-ro, Suwon-si, Gyeonggi-do, 16499, Republic of Korea","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070139768","display_name":"Szil\u00e1rd Zsolt Fazekas","orcid":"https://orcid.org/0000-0001-5319-0395"},"institutions":[{"id":"https://openalex.org/I203765153","display_name":"Akita University","ror":"https://ror.org/03hv1ad10","country_code":"JP","type":"education","lineage":["https://openalex.org/I203765153"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Szil\u00e1rd Zsolt Fazekas","raw_affiliation_strings":["Graduate School of Engineering Science, Akita University, 1-1 Tegatagakuen-machi, Akita City, 010-0852, Akita, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Engineering Science, Akita University, 1-1 Tegatagakuen-machi, Akita City, 010-0852, Akita, Japan","institution_ids":["https://openalex.org/I203765153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002387043","display_name":"Shinnosuke Seki","orcid":"https://orcid.org/0000-0002-0276-3322"},"institutions":[{"id":"https://openalex.org/I20529979","display_name":"University of Electro-Communications","ror":"https://ror.org/02x73b849","country_code":"JP","type":"education","lineage":["https://openalex.org/I20529979"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Shinnosuke Seki","raw_affiliation_strings":["University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, 1828585, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, 1828585, Tokyo, Japan","institution_ids":["https://openalex.org/I20529979"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5092838117","display_name":"Max Wiedenh\u00f6ft","orcid":null},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Max Wiedenh\u00f6ft","raw_affiliation_strings":["Department of Computer Science, Kiel University, Christian-Albrechts-Platz 4, Kiel, 24118, Schleswig-Holstein, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Kiel University, Christian-Albrechts-Platz 4, Kiel, 24118, Schleswig-Holstein, Germany","institution_ids":["https://openalex.org/I32021983"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002387043"],"corresponding_institution_ids":["https://openalex.org/I20529979"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16824658,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"24","issue":"4","first_page":"991","last_page":"1009"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.7825936675071716},{"id":"https://openalex.org/keywords/formal-language","display_name":"Formal language","score":0.6624270081520081},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6610451936721802},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5295948386192322},{"id":"https://openalex.org/keywords/regular-language","display_name":"Regular language","score":0.47378110885620117},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.45229920744895935},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39685705304145813},{"id":"https://openalex.org/keywords/automaton","display_name":"Automaton","score":0.1940220296382904},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17476332187652588},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10798633098602295},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09866032004356384}],"concepts":[{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.7825936675071716},{"id":"https://openalex.org/C146072743","wikidata":"https://www.wikidata.org/wiki/Q192161","display_name":"Formal language","level":2,"score":0.6624270081520081},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6610451936721802},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5295948386192322},{"id":"https://openalex.org/C52370388","wikidata":"https://www.wikidata.org/wiki/Q752532","display_name":"Regular language","level":3,"score":0.47378110885620117},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.45229920744895935},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39685705304145813},{"id":"https://openalex.org/C112505250","wikidata":"https://www.wikidata.org/wiki/Q787116","display_name":"Automaton","level":2,"score":0.1940220296382904},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17476332187652588},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10798633098602295},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09866032004356384},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11047-025-10051-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-025-10051-8","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G2020729107","display_name":null,"funder_award_id":"20K11672","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3703543411","display_name":null,"funder_award_id":"23K10976","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4263996327","display_name":null,"funder_award_id":"437493335","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6425213480","display_name":null,"funder_award_id":"NRF-2022R1G1A1013287","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1561561939","https://openalex.org/W1562193608","https://openalex.org/W1771679278","https://openalex.org/W1986652500","https://openalex.org/W2010332450","https://openalex.org/W2013284377","https://openalex.org/W2023999667","https://openalex.org/W2075622371","https://openalex.org/W2113368761","https://openalex.org/W2120837895","https://openalex.org/W2885162159","https://openalex.org/W2944550477","https://openalex.org/W4220962903","https://openalex.org/W4317254710","https://openalex.org/W6601385952"],"related_works":["https://openalex.org/W1981138299","https://openalex.org/W2017318974","https://openalex.org/W2131290392","https://openalex.org/W2963981206","https://openalex.org/W1485033624","https://openalex.org/W1600278159","https://openalex.org/W2240836793","https://openalex.org/W4298875513","https://openalex.org/W187788765","https://openalex.org/W2002626286"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
