{"id":"https://openalex.org/W4415928319","doi":"https://doi.org/10.1007/s11047-025-10044-7","title":"Model checking for distributed reaction systems with temporal-epistemic properties","display_name":"Model checking for distributed reaction systems with temporal-epistemic properties","publication_year":2025,"publication_date":"2025-11-05","ids":{"openalex":"https://openalex.org/W4415928319","doi":"https://doi.org/10.1007/s11047-025-10044-7"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-025-10044-7","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11047-025-10044-7","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10044-7.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10044-7.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066385212","display_name":"Artur M\u0119ski","orcid":"https://orcid.org/0000-0003-2917-8438"},"institutions":[{"id":"https://openalex.org/I4210087266","display_name":"Institute of Computer Science","ror":"https://ror.org/003fvp964","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I4210159747","display_name":"Vector Oncology (United States)","ror":"https://ror.org/05mkxvs25","country_code":"US","type":"company","lineage":["https://openalex.org/I4210159747"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL","US"],"is_corresponding":false,"raw_author_name":"Artur Meski","raw_affiliation_strings":["Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland","Vector GB Ltd., London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland","institution_ids":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]},{"raw_affiliation_string":"Vector GB Ltd., London, UK","institution_ids":["https://openalex.org/I4210159747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042490356","display_name":"Maciej Koutny","orcid":"https://orcid.org/0000-0003-4563-1378"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maciej Koutny","raw_affiliation_strings":["School of Computing, Newcastle University, Newcastle upon Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Newcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036094384","display_name":"\u0141ukasz Mikulski","orcid":"https://orcid.org/0000-0002-6711-557X"},"institutions":[{"id":"https://openalex.org/I3019271933","display_name":"Nicolaus Copernicus University","ror":"https://ror.org/0102mm775","country_code":"PL","type":"education","lineage":["https://openalex.org/I3019271933"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"\u0141ukasz Mikulski","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Nicolaus Copernicus University in Toru\u0144, Torun, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Nicolaus Copernicus University in Toru\u0144, Torun, Poland","institution_ids":["https://openalex.org/I3019271933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047091186","display_name":"Ion Petre","orcid":"https://orcid.org/0000-0002-5014-5529"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Ion Petre","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Turku, Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040588151","display_name":"Wojciech Penczek","orcid":"https://orcid.org/0000-0001-6477-4863"},"institutions":[{"id":"https://openalex.org/I4210087266","display_name":"Institute of Computer Science","ror":"https://ror.org/003fvp964","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Wojciech Penczek","raw_affiliation_strings":["Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland","institution_ids":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035532665","display_name":"Marcin Pi\u0105tkowski","orcid":"https://orcid.org/0000-0001-5636-9497"},"institutions":[{"id":"https://openalex.org/I3019271933","display_name":"Nicolaus Copernicus University","ror":"https://ror.org/0102mm775","country_code":"PL","type":"education","lineage":["https://openalex.org/I3019271933"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marcin Piatkowski","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Nicolaus Copernicus University in Toru\u0144, Torun, Poland","Interdisciplinary Centre for Mathematical and Computational Modeling, University of Warsaw, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Nicolaus Copernicus University in Toru\u0144, Torun, Poland","institution_ids":["https://openalex.org/I3019271933"]},{"raw_affiliation_string":"Interdisciplinary Centre for Mathematical and Computational Modeling, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5036094384"],"corresponding_institution_ids":["https://openalex.org/I3019271933"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":{"value":2890,"currency":"USD","value_usd":2890},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.20012968,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"24","issue":"4","first_page":"1101","last_page":"1117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.6811000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.6811000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.2727999985218048,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.0071000000461936,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/model-checking","display_name":"Model checking","score":0.7799999713897705},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.7020999789237976},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5958999991416931},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5756000280380249},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5128999948501587},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.49140000343322754},{"id":"https://openalex.org/keywords/computation-tree-logic","display_name":"Computation tree logic","score":0.4796999990940094},{"id":"https://openalex.org/keywords/temporal-logic","display_name":"Temporal logic","score":0.46790000796318054}],"concepts":[{"id":"https://openalex.org/C110251889","wikidata":"https://www.wikidata.org/wiki/Q1569697","display_name":"Model checking","level":2,"score":0.7799999713897705},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7681000232696533},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.7020999789237976},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5958999991416931},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5756000280380249},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5128999948501587},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.49140000343322754},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4860999882221222},{"id":"https://openalex.org/C198008173","wikidata":"https://www.wikidata.org/wiki/Q1040040","display_name":"Computation tree logic","level":3,"score":0.4796999990940094},{"id":"https://openalex.org/C25016198","wikidata":"https://www.wikidata.org/wiki/Q781833","display_name":"Temporal logic","level":2,"score":0.46790000796318054},{"id":"https://openalex.org/C30888246","wikidata":"https://www.wikidata.org/wiki/Q4669969","display_name":"Abstraction model checking","level":3,"score":0.4198000133037567},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.36500000953674316},{"id":"https://openalex.org/C75606506","wikidata":"https://www.wikidata.org/wiki/Q1049183","display_name":"Formal methods","level":2,"score":0.3264000117778778},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.3206000030040741},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.31690001487731934},{"id":"https://openalex.org/C111498074","wikidata":"https://www.wikidata.org/wiki/Q173326","display_name":"Formal verification","level":2,"score":0.3158000111579895},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.30640000104904175},{"id":"https://openalex.org/C184596265","wikidata":"https://www.wikidata.org/wiki/Q2651576","display_name":"Model of computation","level":3,"score":0.2953000068664551},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.2921000123023987},{"id":"https://openalex.org/C112505250","wikidata":"https://www.wikidata.org/wiki/Q787116","display_name":"Automaton","level":2,"score":0.2572999894618988},{"id":"https://openalex.org/C130120984","wikidata":"https://www.wikidata.org/wiki/Q2835898","display_name":"Distributed algorithm","level":2,"score":0.2524999976158142},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.2517000138759613}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s11047-025-10044-7","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11047-025-10044-7","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10044-7.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmh:oai:www.utupub.fi:10024/195599","is_oa":false,"landing_page_url":"https://www.utupub.fi/handle/10024/195599","pdf_url":null,"source":{"id":"https://openalex.org/S4306402470","display_name":"UTUPub (University of Turku)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I155660961","host_organization_name":"University of Turku","host_organization_lineage":["https://openalex.org/I155660961"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1007/s11047-025-10044-7","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11047-025-10044-7","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10044-7.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415928319.pdf","grobid_xml":"https://content.openalex.org/works/W4415928319.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W181848957","https://openalex.org/W1517483046","https://openalex.org/W1549665014","https://openalex.org/W1556012185","https://openalex.org/W1576702025","https://openalex.org/W1972648361","https://openalex.org/W1984638028","https://openalex.org/W1992112582","https://openalex.org/W1994385548","https://openalex.org/W1995984957","https://openalex.org/W2002668213","https://openalex.org/W2004306067","https://openalex.org/W2017288340","https://openalex.org/W2031522732","https://openalex.org/W2052810966","https://openalex.org/W2140306434","https://openalex.org/W2141985408","https://openalex.org/W2146183673","https://openalex.org/W2215907076","https://openalex.org/W2294676259","https://openalex.org/W2478000639","https://openalex.org/W2494337022","https://openalex.org/W2570743269","https://openalex.org/W2574776203","https://openalex.org/W2742475082","https://openalex.org/W2805607193","https://openalex.org/W2922484450","https://openalex.org/W2962680084","https://openalex.org/W4290017183","https://openalex.org/W4377098853","https://openalex.org/W4383033071","https://openalex.org/W4385216613","https://openalex.org/W4402631975","https://openalex.org/W4405924447"],"related_works":[],"abstract_inverted_index":{"Abstract":[0],"Reaction":[1],"systems":[2,29,41],"are":[3,95],"a":[4,84],"model":[5,79,104],"of":[6,21,50,59,62,76,87,100],"computation":[7],"inspired":[8],"by":[9,13],"the":[10,19,27,39,45,57,68,98,101],"biochemistry":[11],"exhibited":[12],"living":[14],"cells.":[15],"This":[16],"paper":[17],"introduces":[18],"notion":[20],"agency":[22],"as":[23],"an":[24],"extension":[25],"to":[26,32,110],"reaction":[28,34,40,64],"formalism,":[30],"leading":[31],"distributed":[33,53,63],"systems.":[35,54],"Adding":[36],"agents":[37],"in":[38],"setting,":[42],"allows":[43],"for":[44],"natural":[46],"modelling":[47],"and":[48,52,72],"representation":[49],"multi-agent":[51],"To":[55],"support":[56],"specification":[58],"temporal-epistemic":[60],"properties":[61],"systems,":[65],"we":[66],"introduce":[67],"logic":[69],"rs":[70,102],"ctlk":[71,103],"present":[73],"experimental":[74,93],"results":[75,94],"its":[77],"associated":[78],"checking":[80,105],"procedure":[81],"run":[82],"on":[83],"biological":[85],"benchmark":[86],"within-cell":[88],"signal":[89],"transduction":[90],"networks.":[91],"The":[92],"encouraging":[96],"despite":[97],"complexity":[99],"problem":[106],"that":[107],"is":[108],"shown":[109],"be":[111],"pspace":[112],"-complete.":[113]},"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-11-05T00:00:00"}