{"id":"https://openalex.org/W4411341065","doi":"https://doi.org/10.1007/s11047-025-10027-8","title":"Protein structure refinement with a memetic algorithm","display_name":"Protein structure refinement with a memetic algorithm","publication_year":2025,"publication_date":"2025-06-16","ids":{"openalex":"https://openalex.org/W4411341065","doi":"https://doi.org/10.1007/s11047-025-10027-8"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-025-10027-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11047-025-10027-8","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10027-8.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10027-8.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021799631","display_name":"Juan Luis Filgueiras","orcid":null},"institutions":[{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Juan Luis Filgueiras","raw_affiliation_strings":["CITIC (Center for Information and Communications Technology Research), Department of Computer Science and Information Technologies, University of A Coru\u00f1a, A Coru\u00f1a, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CITIC (Center for Information and Communications Technology Research), Department of Computer Science and Information Technologies, University of A Coru\u00f1a, A Coru\u00f1a, Spain","institution_ids":["https://openalex.org/I11019714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089427591","display_name":"Jos\u00e9 S\u00e1ntos","orcid":"https://orcid.org/0000-0002-4212-1367"},"institutions":[{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Santos","raw_affiliation_strings":["CITIC (Center for Information and Communications Technology Research), Department of Computer Science and Information Technologies, University of A Coru\u00f1a, A Coru\u00f1a, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CITIC (Center for Information and Communications Technology Research), Department of Computer Science and Information Technologies, University of A Coru\u00f1a, A Coru\u00f1a, Spain","institution_ids":["https://openalex.org/I11019714"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5021799631"],"corresponding_institution_ids":["https://openalex.org/I11019714"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":{"value":2890,"currency":"USD","value_usd":2890},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22785899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"24","issue":"3","first_page":"619","last_page":"635"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/memetic-algorithm","display_name":"Memetic algorithm","score":0.798159122467041},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.7385114431381226},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5943933129310608},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.49493473768234253},{"id":"https://openalex.org/keywords/local-search","display_name":"Local search (optimization)","score":0.25785595178604126}],"concepts":[{"id":"https://openalex.org/C35129592","wikidata":"https://www.wikidata.org/wiki/Q324793","display_name":"Memetic algorithm","level":3,"score":0.798159122467041},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.7385114431381226},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5943933129310608},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.49493473768234253},{"id":"https://openalex.org/C135320971","wikidata":"https://www.wikidata.org/wiki/Q1868524","display_name":"Local search (optimization)","level":2,"score":0.25785595178604126}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11047-025-10027-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11047-025-10027-8","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10027-8.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1007/s11047-025-10027-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s11047-025-10027-8","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-025-10027-8.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1885417913","display_name":null,"funder_award_id":"GPC ED431B 2022/33","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6408590209","display_name":null,"funder_award_id":"PID2023-148531NB-100","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7535663061","display_name":null,"funder_award_id":"AEI/10.","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7805626310","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"}],"funders":[{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320326655","display_name":"Xunta de Galicia","ror":"https://ror.org/0181xnw06"},{"id":"https://openalex.org/F4320328562","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411341065.pdf","grobid_xml":"https://content.openalex.org/works/W4411341065.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W200248288","https://openalex.org/W1548178570","https://openalex.org/W1913397490","https://openalex.org/W2033650210","https://openalex.org/W2042253843","https://openalex.org/W2045777307","https://openalex.org/W2154714625","https://openalex.org/W2310612427","https://openalex.org/W2606439133","https://openalex.org/W2765322245","https://openalex.org/W2793366908","https://openalex.org/W2944347827","https://openalex.org/W2954994557","https://openalex.org/W2963212560","https://openalex.org/W3043693242","https://openalex.org/W3084856361","https://openalex.org/W3159717976","https://openalex.org/W3177828909","https://openalex.org/W3184540805","https://openalex.org/W3186179742","https://openalex.org/W4206310322","https://openalex.org/W4220887157","https://openalex.org/W4309094945","https://openalex.org/W4372331183","https://openalex.org/W4375863182","https://openalex.org/W4399160336"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2010336970","https://openalex.org/W2051487156","https://openalex.org/W4205193211","https://openalex.org/W3034364924","https://openalex.org/W3196925172","https://openalex.org/W3091613133","https://openalex.org/W2102350580"],"abstract_inverted_index":{"Abstract":[0],"A":[1],"memetic":[2,64],"approach":[3],"to":[4,31,72],"protein":[5],"structure":[6],"refinement":[7,19,22],"was":[8],"defined,":[9],"combining":[10],"Differential":[11],"Evolution":[12],"and":[13],"the":[14,33,36,41,53,63,68,81],"widely":[15],"used":[16],"Rosetta":[17,48,73],"Relax":[18,49],"protocol.":[20],"This":[21],"process":[23],"can":[24],"be":[25],"considered":[26],"as":[27],"an":[28],"optimization":[29,45],"problem":[30],"optimize":[32],"positions":[34],"of":[35,40,47],"amino":[37],"acid":[38],"atoms":[39],"protein.":[42],"The":[43,56],"local":[44],"procedures":[46],"are":[50],"integrated":[51],"into":[52],"evolutionary":[54],"algorithm.":[55],"results":[57],"with":[58],"different":[59],"proteins":[60],"show":[61],"that":[62],"algorithm":[65],"better":[66,76],"samples":[67],"energy":[69],"landscape":[70],"compared":[71],"Relax,":[74],"obtaining":[75],"energy-optimized":[77],"refined":[78],"conformations":[79],"in":[80],"same":[82],"runtime.":[83]},"counts_by_year":[],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
